Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P08
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)              109   8e-25
SB_49579| Best HMM Match : No HMM Matches (HMM E-Value=.)             107   3e-24
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.029
SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9)                      30   0.83 
SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)                  29   1.9  
SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4)           28   3.4  
SB_20723| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_58294| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_19274| Best HMM Match : SET (HMM E-Value=2.7e-06)                   28   4.4  
SB_21866| Best HMM Match : UCH (HMM E-Value=0)                         28   4.4  
SB_6830| Best HMM Match : PD40 (HMM E-Value=7)                         27   5.9  
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)                      27   7.7  
SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score =  109 bits (263), Expect = 8e-25
 Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 4/115 (3%)
 Frame = +2

Query: 122 DPANISISFYQVNTGQAPT----LRKKFERKPFNHLFWSPSGQFIVLANLGLTGGALEFL 289
           D    +   ++V   Q P     +++ +E++  N + WSP+GQF VLA L    G LEF 
Sbjct: 357 DALYYNFELFRVRERQIPVDSLEMKETYEKRQANTISWSPNGQFCVLAGLRSMSGVLEFH 416

Query: 290 DTNDFTIMNVCDHYQMSGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKIIRR 454
           DT D+  MN  +H+  + +EWDPTGRYV T VS    K+D GY+IWSFQGK+++R
Sbjct: 417 DTGDWVCMNQAEHFMATDVEWDPTGRYVATSVSWWAHKVDNGYFIWSFQGKLLQR 471



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
 Frame = +2

Query: 2   NFEIFHMREKEIPVDSVEIKEPIQ-----AFAWEPVGSKFAIIHGDPANISISFYQVNTG 166
           NFE+F +RE++IPVDS+E+KE  +       +W P G +F ++ G  +   +  +  +TG
Sbjct: 362 NFELFRVRERQIPVDSLEMKETYEKRQANTISWSPNG-QFCVLAGLRSMSGVLEFH-DTG 419

Query: 167 QAPTLRKKFERKPFNHLFWSPSGQFI 244
               + +  E      + W P+G+++
Sbjct: 420 DWVCMNQA-EHFMATDVEWDPTGRYV 444


>SB_49579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score =  107 bits (258), Expect = 3e-24
 Identities = 46/88 (52%), Positives = 61/88 (69%)
 Frame = +2

Query: 191 FERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVCDHYQMSGIEWDPTGRY 370
           +E++  N + WSP+GQF VLA L    G LEF DT D+  MN  +H+  + +EWDPTGRY
Sbjct: 3   YEKRQANTISWSPNGQFCVLAGLRSMSGVLEFHDTGDWVCMNQAEHFMATDVEWDPTGRY 62

Query: 371 VVTGVSSLKCKMDCGYYIWSFQGKIIRR 454
           V T VS    K+D GY+IWSFQGK+++R
Sbjct: 63  VATSVSWWAHKVDNGYFIWSFQGKLLQR 90


>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 305 TIMNVCDHYQMSGIEWDPTGRYVVTGVSSLKCKM 406
           TI+    HY + G+ WDP G+YVVT  S   C++
Sbjct: 227 TILKDHKHY-VQGVCWDPLGQYVVTNSSDRSCRL 259


>SB_33066| Best HMM Match : RF-1 (HMM E-Value=5.9)
          Length = 378

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 347 EWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKI 445
           EW P G +++T  ++ + +   G+ IW + G +
Sbjct: 306 EWSPDGEHILTATTAPRLREGNGFKIWHYTGAL 338


>SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)
          Length = 584

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
 Frame = +2

Query: 137 SISFYQVNTGQAPTLRKKFERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMN 316
           SI   +  T + P  +        N   +SP  + I L       G L   D +  T+  
Sbjct: 254 SIHSVKSKTVRNPVCKWNVGEGGINEFSFSPDCKHIALVT---QDGYLRVFDFDAQTLYG 310

Query: 317 VCDHY--QMSGIEWDPTGRYVVTG 382
           V   Y   ++ + W P G+YVVTG
Sbjct: 311 VMKSYFGGLTCVCWSPDGKYVVTG 334


>SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4)
          Length = 751

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -3

Query: 175 RRLPGVHL-VEADRDVRRVTVDYSELRPD 92
           +R P +HL ++A+R V RVTV+ S   PD
Sbjct: 591 QRTPRIHLGLKAERTVHRVTVNPSTASPD 619


>SB_20723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 321 QTFIIVKSLVSKNSKAPPVRPKLASTMNCPE 229
           QT I V +  S+  KAP +  K+A T +C E
Sbjct: 32  QTAITVTTTTSREFKAPKMFSKIAETQDCSE 62


>SB_58294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -3

Query: 445 DFPLEGPDVIAAVHLALERGHSSHHIASSRIPFDARHLVMVADVHNSE 302
           D  ++   + A+ H     GH+ HH   +  P   +H+   A  HN +
Sbjct: 3   DGSIQDTSITASSHWVAPLGHNPHHARLNNQPVSGQHIGAWAVQHNQK 50


>SB_19274| Best HMM Match : SET (HMM E-Value=2.7e-06)
          Length = 309

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 162 PGRRRLCARSSRGSRSTICSGHPRGSS*CSPTWVSPVE 275
           P   RLC  S  G++  +C+ HP        TW+ P E
Sbjct: 79  PDEVRLCKSSIPGAKFGVCAAHPIPPG----TWIGPFE 112


>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
          Length = 2165

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 41   VDSVEIKEPIQAFAWEPVGSKFAIIHGDPANISISF 148
            V  +++ + +Q  AW   G    +I G P +IS +F
Sbjct: 999  VPDLKVIKAVQQLAWASAGGTLQLIDGSPEDISKTF 1034


>SB_6830| Best HMM Match : PD40 (HMM E-Value=7)
          Length = 218

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +2

Query: 32  EIPVDSVEIKEPIQAFAWEPVGSKFAIIHGD 124
           ++P  ++ +   +   AW+P G + A+I  D
Sbjct: 115 DLPTGTITVGGLVHTMAWDPTGERLAVIFED 145


>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 29  KEIPVDSVEIKEPIQAFAWEPVGSKFAIIH 118
           K I  D +EIK+ I +    P GSK A +H
Sbjct: 75  KLIEDDHIEIKDGIISLCLSPDGSKLAAVH 104


>SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)
          Length = 1710

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 279  KAPPVRPKLASTMNCPEGDQNRWLNGFLSNFLRR 178
            K+P V P ++  M C  G  N  +  F+SN + R
Sbjct: 1264 KSPVVHPDVSRAMACFSGRYNTNMKHFVSNIVHR 1297


>SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1665

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 309 IVKSLVSKNSKAPPVRPKLASTMNCPEGDQNRWLNG 202
           + +SLV  N+        L    N PEG  ++W+NG
Sbjct: 22  VEESLVDMNNTVLKATVSLELQYNAPEGHISQWVNG 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,930,021
Number of Sequences: 59808
Number of extensions: 336553
Number of successful extensions: 906
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)