Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_P08
(468 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 142 1e-34
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 142 1e-34
At1g49015.1 68414.m05496 eukaryotic translation initiation facto... 81 5e-16
At1g73180.1 68414.m08469 eukaryotic translation initiation facto... 54 4e-08
At3g56900.1 68416.m06329 aladin-related / adracalin-related weak... 37 0.006
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 36 0.010
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 36 0.010
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 36 0.010
At4g34320.1 68417.m04878 expressed protein similar to At14a, GI:... 31 0.39
At5g05570.1 68418.m00605 transducin family protein / WD-40 repea... 31 0.51
At2g06860.1 68415.m00768 Ulp1 protease family protein contains P... 31 0.51
At5g41170.1 68418.m05004 pentatricopeptide (PPR) repeat-containi... 29 1.6
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain... 29 2.1
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 29 2.1
At1g75080.2 68414.m08720 brassinosteroid signalling positive reg... 28 2.7
At1g75080.1 68414.m08719 brassinosteroid signalling positive reg... 28 2.7
At5g66675.1 68418.m08405 expressed protein 28 3.6
At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase fam... 28 3.6
At4g24100.1 68417.m03460 protein kinase family protein contains ... 27 4.8
At2g18630.1 68415.m02169 expressed protein unusual splice site a... 27 4.8
At1g64790.1 68414.m07346 translational activator family protein ... 27 4.8
At4g19220.1 68417.m02835 pentatricopeptide (PPR) repeat-containi... 27 6.3
At4g10730.1 68417.m01753 protein kinase family protein contains ... 27 6.3
At3g04570.1 68416.m00485 DNA-binding protein-related contains Pf... 27 6.3
At5g48860.1 68418.m06044 hypothetical protein 27 8.4
At5g14720.1 68418.m01727 protein kinase family protein contains ... 27 8.4
At3g08790.1 68416.m01021 VHS domain-containing protein / GAT dom... 27 8.4
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 142 bits (344), Expect = 1e-34
Identities = 66/160 (41%), Positives = 102/160 (63%), Gaps = 6/160 (3%)
Frame = +2
Query: 5 FEIFHMREKEIPVDSVEI---KEPIQAFAWEPVGSKFAIIHGDPANISISFYQVNTGQAP 175
FE+F ++E++IP++ +E+ + I AFAWEP G +FA+IHGD +SFY + T Q
Sbjct: 440 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDQPRPDVSFYSMKTAQNT 499
Query: 176 TLRKKF---ERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVCDHYQMSGI 346
K + K N LFWSP+G++I+LA L G LEF + ++ M +H+ + I
Sbjct: 500 GRVSKLATLKAKQANALFWSPTGKYIILAGLKGFNGQLEFFNVDELETMATAEHFMATDI 559
Query: 347 EWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKIIRRVMKE 466
EWDPTGRYV T V+++ +M+ G+ IWSF G ++ R++K+
Sbjct: 560 EWDPTGRYVATSVTTVH-EMENGFTIWSFNGNMVYRILKD 598
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 142 bits (343), Expect = 1e-34
Identities = 67/160 (41%), Positives = 102/160 (63%), Gaps = 6/160 (3%)
Frame = +2
Query: 5 FEIFHMREKEIPVDSVEI---KEPIQAFAWEPVGSKFAIIHGDPANISISFYQVNTGQAP 175
FE+F ++E++IP++ +E+ + I AFAWEP G +FA+IHGD +SFY + T Q
Sbjct: 439 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDQPRPDVSFYSMKTAQNT 498
Query: 176 TLRKKF---ERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVCDHYQMSGI 346
K + K N LFWSP+G++I+LA L G LEF + ++ M +H+ + I
Sbjct: 499 GRVSKLATLKAKQANALFWSPTGKYIILAGLKGFNGQLEFFNVDELETMATAEHFMATDI 558
Query: 347 EWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKIIRRVMKE 466
EWDPTGRYV T V+S+ +M+ G+ IWSF G ++ R++K+
Sbjct: 559 EWDPTGRYVATAVTSVH-EMENGFTIWSFNGIMLYRILKD 597
>At1g49015.1 68414.m05496 eukaryotic translation initiation
factor-related contains similarity to eukaryotic
translation initiation factor 3 subunit 9 SP:Q9C5Z1
Length = 227
Score = 80.6 bits (190), Expect = 5e-16
Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Frame = +2
Query: 5 FEIFHMREKE-IPVDSVEIKEPIQAFAWEPVGSKFAIIHGDPANISISFYQVNTGQAPTL 181
FE+F + + I +++E+ E I AFAWEP G +FA+IHGD + ++SFY + T Q P
Sbjct: 119 FELFRFNKVQGITTEALEVDEKILAFAWEPSGHRFAVIHGDQSKPNVSFYSMETPQNPGK 178
Query: 182 RKK---FERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDT 295
K F+ K + LFWSP G+ IVLA L A+ T
Sbjct: 179 VSKLATFDDKEADALFWSPRGKHIVLAGLKAASMAISSFST 219
>At1g73180.1 68414.m08469 eukaryotic translation initiation
factor-related similar to eukaryotic translation
initiation factor 2A (GI:21956484) [Homo sapiens];
similar to Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b)
(Swiss-Prot:P55884) [Homo sapiens]
Length = 513
Score = 54.4 bits (125), Expect = 4e-08
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Frame = +2
Query: 65 PIQAFAWEPVGSKFAIIHGD-PANISISFYQVNTGQAPTLRKKFERKPFNHLFWSPSGQF 241
P+ W GS+FA+++G PA ++I + N P + + P+N L W+P G+
Sbjct: 274 PVHDVQWSFSGSEFAVVYGFMPACVTI--FDKNC--KPLM--ELGEGPYNTLRWNPKGRV 327
Query: 242 IVLANLGLTGGALEFLDT-NDFTIMNVCDHYQMSGIEWDPTGRYVVTGVSSLKCKMDCGY 418
+ +A G G + F D N + + + ++ EW P GRY +T ++ + ++D G
Sbjct: 328 LCVAGFGNLPGDMAFWDVVNKKQLGSNKAEWSVTS-EWSPDGRYFLTASTAPRRQIDNGM 386
Query: 419 YIWSFQGKIIRRVMKE 466
I+++ GK + M E
Sbjct: 387 KIFNYDGKRYYKKMFE 402
>At3g56900.1 68416.m06329 aladin-related / adracalin-related weak
similarity to SP|Q9NRG9 Aladin (Adracalin) (GL003) {Homo
sapiens}; non-consensus AT-AC splice sites at intron 6
Length = 447
Score = 37.1 bits (82), Expect = 0.006
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Frame = +2
Query: 62 EPIQAFAWEPVGSKFAIIHGDPANISISFYQVNTGQAPTLRKKFERKPFNHLFWSPSGQF 241
E I A +W P G A D ++ +I + V+ G +R+ + L WSP+G +
Sbjct: 213 EQISALSWSPCGRYLASASYDSSSFTI--WDVSQGAGTPIRRGLGG--ISMLKWSPTGDY 268
Query: 242 IVLANLGLTGGALEFLDTNDFTIMN---VCDHYQMSGIEWDPTGRYVVTGVS 388
A G +TN +T ++G WDP GR+++ S
Sbjct: 269 FFAARFD---GTFCLWETNTWTSEPWSLSSGSGSVTGAIWDPEGRFILISFS 317
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 36.3 bits (80), Expect = 0.010
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +2
Query: 191 FERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVCD---HYQMSGIEWDPT 361
F RK L WSP +++ G + D N ++ + D HY + G+ WDP
Sbjct: 51 FHRKDVLDLQWSPDDAYLIS---GSVDNSCIIWDVNKGSVHQILDAHCHY-VQGVAWDPL 106
Query: 362 GRYVVTGVSSLKCKM 406
+YV + S C++
Sbjct: 107 AKYVASLSSDRTCRI 121
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 36.3 bits (80), Expect = 0.010
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +2
Query: 191 FERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVCD---HYQMSGIEWDPT 361
F RK L WSP +++ G + D N ++ + D HY + G+ WDP
Sbjct: 110 FHRKDVLDLQWSPDDAYLIS---GSVDNSCIIWDVNKGSVHQILDAHCHY-VQGVAWDPL 165
Query: 362 GRYVVTGVSSLKCKM 406
+YV + S C++
Sbjct: 166 AKYVASLSSDRTCRI 180
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 36.3 bits (80), Expect = 0.010
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +2
Query: 191 FERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVCD---HYQMSGIEWDPT 361
F RK L WSP +++ G + D N ++ + D HY + G+ WDP
Sbjct: 110 FHRKDVLDLQWSPDDAYLIS---GSVDNSCIIWDVNKGSVHQILDAHCHY-VQGVAWDPL 165
Query: 362 GRYVVTGVSSLKCKM 406
+YV + S C++
Sbjct: 166 AKYVASLSSDRTCRI 180
>At4g34320.1 68417.m04878 expressed protein similar to At14a,
GI:11994571 and GI:11994573 [Arabidopsis thaliana]
Length = 374
Score = 31.1 bits (67), Expect = 0.39
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 312 IIVKSLVSKNSKAPPVRPKLASTMNCPEGDQNRWLNGFLSNF 187
+++ S+V+ APPV LA+ P G +W++ N+
Sbjct: 224 VLICSVVAAAMAAPPVAAALAAATAVPLGSMGKWIDSLWKNY 265
>At5g05570.1 68418.m00605 transducin family protein / WD-40 repeat
family protein similar to unknown protein (pir||T04661);
contains Pfam PF00400: WD domain, G-beta repeat (4
copies, 2 weak)|8683726|gb|AV524198.1|AV524198
Length = 1124
Score = 30.7 bits (66), Expect = 0.51
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 26 EKEIPVDSVEIKEPIQAFAWEPVGSKFAIIHG 121
E EI V +++++P + WE + FAI+HG
Sbjct: 106 ENEIQVWDLDLRQPASSLKWESNITAFAILHG 137
>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 938
Score = 30.7 bits (66), Expect = 0.51
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +1
Query: 136 LDQLLPSEHRAGADSAQEVREEAVQPSVLVTLGAVHSARQLGSHRWSFGVFGH*RFHYYE 315
+D +LP + + + E +V+P T S R LG R SFG +G + +
Sbjct: 862 MDAILPVKGESTKNGHGETDRRSVRPKGDSTDNQQESPRPLGVKRISFGSYG-----WID 916
Query: 316 RLRPLPDVGHRM 351
+LR LP RM
Sbjct: 917 KLRALPTTMDRM 928
>At5g41170.1 68418.m05004 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 527
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 308 IMNVCDHYQMSGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKIIR 451
++N+CDH Q+ G+ D Y + + C+ Y SF GK+++
Sbjct: 91 VINLCDHLQIMGVSHD---LYTCNLLMNCFCQSSQPYLASSFLGKMMK 135
>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein
Length = 564
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = +2
Query: 95 GSKFAIIHGDPANISISFYQVNTGQAPTLRKKFERKPFNHLFWSPSGQ 238
G+ + +H + +++ ++ +QV QA ++++ FER P+ L + Q
Sbjct: 161 GAVSSHLHKETSSVDVNGFQVLPSQAESVKRIFERHPYMALEFRAKNQ 208
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 28.7 bits (61), Expect = 2.1
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 221 WSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVCDH-YQMSGIEWDPTGRYVVTGVSSLK 397
WSPSGQ + A+ T G + + I + H ++ + W+ +G + T
Sbjct: 82 WSPSGQLLATASFDGTTGIWKNYGSEFECISTLEGHENEVKSVSWNASGSCLAT------ 135
Query: 398 CKMDCGYYIW 427
C D +IW
Sbjct: 136 CSRDKSVWIW 145
>At1g75080.2 68414.m08720 brassinosteroid signalling positive
regulator (BZR1) identical to to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 336
Score = 28.3 bits (60), Expect = 2.7
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 38 PVDSVEIKEPIQAFAWEPVGSK-FAIIHGDPANISISFYQVNTGQAPTLRKKF 193
PV S K P WE + + AI A+ + FY V+ +PT R +F
Sbjct: 179 PVSSPTSKNPKPLPNWESIAKQSMAIAKQSMASFNYPFYAVSAPASPTHRHQF 231
>At1g75080.1 68414.m08719 brassinosteroid signalling positive
regulator (BZR1) identical to to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 336
Score = 28.3 bits (60), Expect = 2.7
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 38 PVDSVEIKEPIQAFAWEPVGSK-FAIIHGDPANISISFYQVNTGQAPTLRKKF 193
PV S K P WE + + AI A+ + FY V+ +PT R +F
Sbjct: 179 PVSSPTSKNPKPLPNWESIAKQSMAIAKQSMASFNYPFYAVSAPASPTHRHQF 231
>At5g66675.1 68418.m08405 expressed protein
Length = 412
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 312 IIVKSLVSKNSKAPPVRPKLASTMNCPEGDQNRWLN 205
+++ S+V+ APPV LA+ + P G +W N
Sbjct: 249 VLIFSVVAAAVAAPPVVTALAAALAVPIGSIGKWCN 284
>At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase family
protein similar to iturin A synthetase C [Bacillus
subtilis] GI:16040972; contains Pfam profile PF00501:
AMP-binding enzyme
Length = 1040
Score = 27.9 bits (59), Expect = 3.6
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 2/129 (1%)
Frame = -3
Query: 448 NDFPLEGPDVIAAVHLALERGHSSHHIASSRIPFDARHLVMVADVHNSEIVSVQKLQSST 269
+DF G D +AA HL+ G I R P +R L+ +++ E + +Q +T
Sbjct: 515 DDFFAIGGDSLAAAHLSHSLGIDMRLIYQFRSP--SRLLIYLSE---KEGKLREDMQHNT 569
Query: 268 GETQVGEH-YELPRG*PEQMVER-LPLELLAQSRRLPGVHLVEADRDVRRVTVDYSELRP 95
TQ +H E G +V R +PL S P E + +R+ +DY + P
Sbjct: 570 --TQKLDHKIESQNG--NGLVSRTVPLHSGVTSGPTPSKLQCEKNNSPKRLKIDYEKFSP 625
Query: 94 DRFPSESLY 68
R L+
Sbjct: 626 KRMKENKLW 634
>At4g24100.1 68417.m03460 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 709
Score = 27.5 bits (58), Expect = 4.8
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -1
Query: 357 GSHSMPDIW*WSQTFIIVKSLVSKNSKAPPVRPKLASTMNCPEGDQNRWLNGFLSNFLRR 178
G +S DIW + T + + + SK PP++ L + N P G F +F
Sbjct: 211 GYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEM 270
Query: 177 VGACPV 160
V C V
Sbjct: 271 VAMCLV 276
>At2g18630.1 68415.m02169 expressed protein unusual splice site at
second intron; GA instead of conserved GT at donor site;
similar to At14a GI:11994571 and GI:11994573
[Arabidopsis thaliana]
Length = 393
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 312 IIVKSLVSKNSKAPPVRPKLASTMNCPEGDQNRWLN 205
+++ S+V+ APPV +A + P G +W N
Sbjct: 235 VLIFSVVAAAVAAPPVVAAIAGALAVPVGSVGKWCN 270
>At1g64790.1 68414.m07346 translational activator family protein
similar to HsGCN1 [Homo sapiens] GI:2282576
Length = 2440
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 136 LDQLLPSEHRAGADSAQEVREEA 204
+DQL+P+ A DSA EVRE A
Sbjct: 1775 MDQLIPTIRTALCDSALEVRESA 1797
>At4g19220.1 68417.m02835 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 932
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1
Query: 154 SEHRAGADSAQEVREEAVQPSVLVTLGAVHSARQLGSHRWSFGVFGH 294
S+++AG + Q R ++P+ + +G + ++ QLGS S+G+ H
Sbjct: 658 SQNKAGREVFQLFRNLKLEPNEITFVGLLSASTQLGS--TSYGMQAH 702
>At4g10730.1 68417.m01753 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 708
Score = 27.1 bits (57), Expect = 6.3
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -1
Query: 357 GSHSMPDIW*WSQTFIIVKSLVSKNSKAPPVRPKLASTMNCPEGDQNRWLNGFLSNFLRR 178
G +S DIW + T + + + SK PP++ L + N P G F +F
Sbjct: 225 GYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEL 284
Query: 177 VGACPV 160
V C V
Sbjct: 285 VALCLV 290
>At3g04570.1 68416.m00485 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 315
Score = 27.1 bits (57), Expect = 6.3
Identities = 8/22 (36%), Positives = 18/22 (81%)
Frame = -3
Query: 436 LEGPDVIAAVHLALERGHSSHH 371
L+ PD+ ++++A++ GH++HH
Sbjct: 25 LKKPDLHISMNMAMDSGHNNHH 46
>At5g48860.1 68418.m06044 hypothetical protein
Length = 175
Score = 26.6 bits (56), Expect = 8.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 41 VDSVEIKEPIQAFAWEPVGSKFAIIH 118
+D EI P+Q++ W+ GSK + H
Sbjct: 79 MDPPEIPNPVQSYTWKLRGSKNKVQH 104
>At5g14720.1 68418.m01727 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 674
Score = 26.6 bits (56), Expect = 8.4
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -1
Query: 339 DIW*WSQTFIIVKSLVSKNSKAPPVRPKLASTMNCPEGDQNRWLNGFLSNFLRRVGACPV 160
D+W + T + + + SK PP++ L + N P G F F VG C V
Sbjct: 200 DVWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKAFKEMVGTCLV 259
>At3g08790.1 68416.m01021 VHS domain-containing protein / GAT
domain-containing protein weak similarity to
HGF-regulated tyrosine kinase substrate [Mus musculus]
GI:1089781; contains Pfam profiles PF00790: VHS domain,
PF03127: GAT domain
Length = 607
Score = 26.6 bits (56), Expect = 8.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 122 DPANISISFYQVNTGQAPTLRKKFERKPFNHLF 220
D N + + YQV++ Q P + K +KP + LF
Sbjct: 555 DNGNNNTNPYQVSSHQPPPMMKPMNKKPEDKLF 587
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,226,840
Number of Sequences: 28952
Number of extensions: 243654
Number of successful extensions: 765
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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