Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P07
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid deplet...    29   1.2  
AF083226-1|AAD03684.1|  560|Caenorhabditis elegans nuclear recep...    27   6.4  
AF078783-6|AAC26923.1|  473|Caenorhabditis elegans Hypothetical ...    27   6.4  
AF036702-11|AAP31436.1|  560|Caenorhabditis elegans Nuclear horm...    27   6.4  
Z35663-14|CAA84733.1|  805|Caenorhabditis elegans Hypothetical p...    26   8.5  
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    26   8.5  

>AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid depleted
           protein 3 protein.
          Length = 1599

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 227 SDCRATVPGLTLEISYTGTDANEDS*KAGLSTDSAFTAFV 108
           +DC  T+P LTLE++   T  N D+   G+     F  F+
Sbjct: 783 ADCLLTLPRLTLELTSKRTRDNIDNYVGGIHISGQFKGFM 822


>AF083226-1|AAD03684.1|  560|Caenorhabditis elegans nuclear receptor
           NHR-8 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
 Frame = +1

Query: 73  PLTS-LVVVKPNETNAVNA-ESVD-------KPAFQESSFASVPVYDISNVRPGTVALQS 225
           P+T  L   +P +T AVN+ + +          +F  SS +++    + +  P +     
Sbjct: 172 PITQRLTAYEPKDTTAVNSPQDISFSHHLHHSDSFYSSSTSTLSPMSVISCAPSSHDSSG 231

Query: 226 LPSPQLTAD--TSYQYQPLSIPQHFSMARPQLAS 321
             + QL     T+Y   P SIP   +   PQ+ S
Sbjct: 232 YNTSQLVTQSPTNYTVSPASIPSSITELSPQMPS 265


>AF078783-6|AAC26923.1|  473|Caenorhabditis elegans Hypothetical
           protein H10E21.5 protein.
          Length = 473

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 204 RNRSSAITPKSAINRRYFVPIPTIIYTSTLFYGATAT 314
           ++RS++IT  +A  R+  +P P  I TST+    ++T
Sbjct: 421 KSRSASITRSAATIRKESLPTPIEITTSTVIPATSST 457


>AF036702-11|AAP31436.1|  560|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 8, isoform a protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
 Frame = +1

Query: 73  PLTS-LVVVKPNETNAVNA-ESVD-------KPAFQESSFASVPVYDISNVRPGTVALQS 225
           P+T  L   +P +T AVN+ + +          +F  SS +++    + +  P +     
Sbjct: 172 PITQRLTAYEPKDTTAVNSPQDISFSHHLHHSDSFYSSSTSTLSPMSVISCAPSSHDSSG 231

Query: 226 LPSPQLTAD--TSYQYQPLSIPQHFSMARPQLAS 321
             + QL     T+Y   P SIP   +   PQ+ S
Sbjct: 232 YNTSQLVTQSPTNYTVSPASIPSSITELSPQMPS 265


>Z35663-14|CAA84733.1|  805|Caenorhabditis elegans Hypothetical
           protein T04A8.16 protein.
          Length = 805

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +1

Query: 154 ESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPQHFSMARPQLASFSSY 333
           E  F  VPV D+SN+        S PS Q     +  + P S        + +LA   + 
Sbjct: 161 ELLFPEVPVDDLSNLNFNNQPSPSTPSNQPFKSPTRNFPP-SPSNSQKFTKEELAVLFTT 219

Query: 334 ADVSDR--VEFESYD 372
           ++++++  V F +YD
Sbjct: 220 SNINNKLYVPFHNYD 234


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 151 QESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPQ 288
           Q S+  ++P Y I      T+ LQ++PS Q +   +   Q L+  Q
Sbjct: 13  QSSNQPTIPTYLIQPSIQSTIPLQTVPSTQQSCQHTLPQQTLASAQ 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.312    0.126    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,120,499
Number of Sequences: 27780
Number of extensions: 158435
Number of successful extensions: 500
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)