Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_P05
(289 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 2.2
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 25 2.9
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 24 3.8
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 24 5.0
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 24 5.0
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 23 6.7
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 23 8.8
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 23 8.8
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 23 8.8
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 23 8.8
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.0 bits (52), Expect = 2.2
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -2
Query: 201 SLSKG-NPRGIVSK-HTLHRQAYLAFIVDISIDGK-TIPVLTGV 79
+L +G +P+ + K H LH++ Y F +D G+ T P TG+
Sbjct: 280 ALEEGVSPKELCDKYHALHKEVYDWFEIDFDHFGRTTTPKQTGI 323
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 24.6 bits (51), Expect = 2.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 138 DTLVGGVYVSTQCPLDSPSIGK 203
DT+V +T P DSPSIG+
Sbjct: 771 DTVVSRSGTATTTPTDSPSIGE 792
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 24.2 bits (50), Expect = 3.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 99 IPVLTGVTMTNIWRGKPPRVPRVTE 25
IP+L V + W+GKPP + R E
Sbjct: 77 IPLLL-VNIAKYWKGKPPLLKRRME 100
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 23.8 bits (49), Expect = 5.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 80 TPVKTGMVLPSIDMSTMKARYACRWSVCFDTMPL 181
+P K ++ P ID+ ++ +WS D M L
Sbjct: 182 SPFKDPVLAPVIDLCNHSSKSNAKWSFSEDAMQL 215
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 23.8 bits (49), Expect = 5.0
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -2
Query: 174 IVSKHTLHRQAYLAFIVDISIDGKTIPVL 88
I S+++L AY+ F VD ++ + +P++
Sbjct: 993 IESENSLDFIAYIRFYVDTVVNSENVPIV 1021
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 23.4 bits (48), Expect = 6.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 157 CMFRHNAPWIPLR*GNLYAYFLHK 228
C FRH+ P+IP NL Y + K
Sbjct: 56 CAFRHDGPFIPSS-ENLEQYSVKK 78
>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 141
Score = 23.0 bits (47), Expect = 8.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 264 FCIPCTSVNFMCFVKKVGI*IS 199
F I CTS+ F C+++ + IS
Sbjct: 107 FQIFCTSILFTCYIQSFSLLIS 128
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 23.0 bits (47), Expect = 8.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 94 GLDGSHDDEHLERQTAEGSESNRSLCGKP 8
G+D D +L + EG E+N L G P
Sbjct: 546 GIDDKDIDLNLMKNIIEGIEANPDLYGGP 574
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 23.0 bits (47), Expect = 8.8
Identities = 17/81 (20%), Positives = 34/81 (41%)
Frame = +2
Query: 38 GTLGGLPLQMFVIVTPVKTGMVLPSIDMSTMKARYACRWSVCFDTMPLGFPFDREIYMPT 217
G +G + + + M P+ D ++ AR + F P+ +++Y P+
Sbjct: 23 GIVGNMHTSAMISLDGSVEMMCWPNFDSPSIFARILDARAGHFSITPIEQTSCKQMYEPS 82
Query: 218 FFTKHMKFTDVQGIQNGLIDY 280
H KF +G+ L+D+
Sbjct: 83 TNILHTKFYSERGVLR-LLDF 102
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 23.0 bits (47), Expect = 8.8
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 168 SKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPP 46
S HTL + YL +S+D T+ VT+ + K P
Sbjct: 934 SSHTLEKGEYLYKFQLLSVDPSTLERFRNVTLRLTKKLKKP 974
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,279,714
Number of Sequences: 5004
Number of extensions: 24991
Number of successful extensions: 61
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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