Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P03
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    31   0.097
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    31   0.097
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    31   0.097
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   3.7  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   3.7  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    26   4.8  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   6.4  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   8.5  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   8.5  

>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 31.5 bits (68), Expect = 0.097
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -2

Query: 429 LDLILYQNYLFVDRCVLGGAYGFINVTDVFFSDDCEVEVSIRPSCDAAIKVSHISVRISS 250
           + ++L Q  L    C +G  YG IN+  + FS+  +      P     + +S      S+
Sbjct: 267 ISILLSQPILICVACTIGSIYGMINLVLIAFSEVWKSSYDFSPGISGLMYISITLGLFSA 326

Query: 249 GQTFLPSNQGF 217
               +P NQ F
Sbjct: 327 VFIAMPINQKF 337


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 31.5 bits (68), Expect = 0.097
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -2

Query: 429 LDLILYQNYLFVDRCVLGGAYGFINVTDVFFSDDCEVEVSIRPSCDAAIKVSHISVRISS 250
           + ++L Q  L    C +G  YG IN+  + FS+  +      P     + +S      S+
Sbjct: 267 ISILLSQPILICVACTIGSIYGMINLVLIAFSEVWKSSYDFSPGISGLMYISITLGLFSA 326

Query: 249 GQTFLPSNQGF 217
               +P NQ F
Sbjct: 327 VFIAMPINQKF 337


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 31.5 bits (68), Expect = 0.097
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -2

Query: 429 LDLILYQNYLFVDRCVLGGAYGFINVTDVFFSDDCEVEVSIRPSCDAAIKVSHISVRISS 250
           + ++L Q  L    C +G  YG IN+  + FS+  +      P     + +S      S+
Sbjct: 267 ISILLSQPILICVACTIGSIYGMINLVLIAFSEVWKSSYDFSPGISGLMYISITLGLFSA 326

Query: 249 GQTFLPSNQGF 217
               +P NQ F
Sbjct: 327 VFIAMPINQKF 337


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +1

Query: 232 WKKR--LSGADPNADVTDFDRRITAGPDGN 315
           WK+   ++  +PNA +T F+R   +  DGN
Sbjct: 458 WKRTDDIASGEPNAILTSFNRNFRSRNDGN 487


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 28  LRPQASDEGQYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQ 186
           LR  + +       +++PA   S  V   R+   + SP+ T +K  + G PFQ
Sbjct: 571 LRTPSGERSMRADLSQSPASYDSLNVPKHRRRQSLFSPSSTKKK--LSGSPFQ 621


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 443 NNSGYKGEPV--PQYVSQDMMAKAGEFSHIYWRYEATSG 553
           N+  Y G+P   P+Y S  M+ +  +  + +W +   +G
Sbjct: 72  NDESYTGDPGKGPEYTSSTMLKREKQARYAFWGFLGLTG 110


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 229  TWKKRLSGADPNADV 273
            TW+KRL G   N DV
Sbjct: 1468 TWRKRLEGCQKNVDV 1482


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 135 IASEDTRENANRRQAFPIGLCAAERL 212
           I + DT   A RRQ F   L AAER+
Sbjct: 474 IFNNDTLSRAERRQRFRQSLRAAERI 499


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 109 SFRKTYLIASPAKTHEKTP 165
           +FRKTYL AS A  H   P
Sbjct: 585 AFRKTYLFASNAGIHINAP 603


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,814
Number of Sequences: 5004
Number of extensions: 49933
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)