Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_P03
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0915 + 28755584-28756139,28756695-28756846,28756994-287569... 31 0.53
10_01_0039 + 447573-448911,451247-451296,451322-451423 30 1.6
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468... 29 3.8
02_05_0854 - 32267047-32267298,32267383-32268194,32268289-322684... 29 3.8
02_05_0853 + 32261705-32261794,32261895-32262027,32262117-322629... 29 3.8
01_03_0269 + 14442886-14442978,14443306-14443377,14443551-144440... 29 3.8
10_01_0037 + 434995-436299 28 5.0
08_01_0524 - 4560471-4560572,4560864-4560971,4561413-4561556,456... 28 5.0
08_02_0141 - 13112399-13112514,13112898-13112994,13113113-13113430 27 8.7
06_03_0987 - 26589277-26589420,26589620-26589774,26589845-26589890 27 8.7
>03_05_0915 +
28755584-28756139,28756695-28756846,28756994-28756996,
28757587-28757690,28758033-28758121,28758682-28758825,
28759194-28759291,28759380-28759502,28760045-28760113,
28760206-28760406
Length = 512
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 25 FLRPQASDEGQYQCFAETPAGVASSRVIS 111
FLRP A+D Y CF GVAS ++I+
Sbjct: 274 FLRPNAADLSDYGCFVVLALGVASLQMIA 302
>10_01_0039 + 447573-448911,451247-451296,451322-451423
Length = 496
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 204 RLHTVQLERPAFDWRFLVCLRWRCDEVSLPEADHPR 97
RL +L R D++ L WRC +LP A H R
Sbjct: 259 RLLPARLGRRCTDFQLLAATLWRCRTAALPYAPHRR 294
>07_03_1258 +
25244863-25245282,25246419-25246568,25246665-25246877,
25246979-25247068,25247311-25247424,25247881-25248150,
25248251-25248407,25248691-25248741,25248742-25248819,
25249357-25249457,25249832-25250002,25250136-25250210,
25251527-25251793
Length = 718
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 446 NSGYKGEPVPQYVSQDMMAKAGEFSHIYWRYEATSGTWSS 565
NSG+ E + Q S + K + + +R+EAT WSS
Sbjct: 244 NSGFSKEVLLQGTSHPLKEKGRQGEKLSFRHEATVENWSS 283
>02_05_0854 -
32267047-32267298,32267383-32268194,32268289-32268421,
32268530-32268619
Length = 428
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 205 NAYPKPLITWKKRLSGADPNADVTDFDRR--ITAGPDGNLY 321
NA+ + L+ W R+ GA+ NA DF + + +G L+
Sbjct: 246 NAHRQELVNWVDRVGGANSNATAFDFTTKGILNVAVEGELW 286
>02_05_0853 +
32261705-32261794,32261895-32262027,32262117-32262928,
32263020-32263271
Length = 428
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 205 NAYPKPLITWKKRLSGADPNADVTDFDRR--ITAGPDGNLY 321
NA+ + L+ W R+ GA+ NA DF + + +G L+
Sbjct: 246 NAHRQELVNWVDRVGGANSNATTFDFTTKGILNVAVEGELW 286
>01_03_0269 +
14442886-14442978,14443306-14443377,14443551-14444045,
14444134-14444253
Length = 259
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 205 NAYPKPLITWKKRLSGADPNADVTDF 282
NA+ + L+ W R+ GA+ NA DF
Sbjct: 123 NAHRQELVNWVNRVGGANSNATAFDF 148
>10_01_0037 + 434995-436299
Length = 434
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 204 RLHTVQLERPAFDWRFLVCLRWRCDEVSLPEADHPR 97
RL L R D++ L WRC +LP A H R
Sbjct: 258 RLLPAPLGRRCTDFQLLPAALWRCRTAALPYAPHRR 293
>08_01_0524 -
4560471-4560572,4560864-4560971,4561413-4561556,
4561655-4561747,4561906-4561968,4562086-4562133,
4562677-4562835,4563251-4563589
Length = 351
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 307 DGNLYFTIVTKEDVSDIYKSV--CTAK--NAAVDEEVVLVE-YEIKGVTKEQL 450
DG F +V K DV IYKS+ C A+ N+ D V + + Y ++ T+E L
Sbjct: 83 DGGEPFYVVRKGDVIGIYKSLSDCQAQVSNSVCDPSVTVYKGYSLRKETEEYL 135
>08_02_0141 - 13112399-13112514,13112898-13112994,13113113-13113430
Length = 176
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +2
Query: 65 ASLKPQPVLPARG*SASGRLTSSHRQRRHTRKRQSKAGLSN 187
ASL P+PVLPA +A+ +SS R R S G SN
Sbjct: 2 ASLLPRPVLPA---AAAASTSSSSRCRYRITTSSSARGWSN 39
>06_03_0987 - 26589277-26589420,26589620-26589774,26589845-26589890
Length = 114
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 129 EVSLPEADHPRAGNTGWGF 73
EV LP + PR G+ WGF
Sbjct: 24 EVQLPRGNDPRGGSYPWGF 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,696,704
Number of Sequences: 37544
Number of extensions: 351921
Number of successful extensions: 960
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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