Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P03
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71330.1 68414.m08233 ABC transporter family protein contains...    30   1.3  
At4g30560.1 68417.m04337 cyclic nucleotide-regulated ion channel...    29   3.1  
At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative ...    28   5.4  
At2g18220.1 68415.m02123 expressed protein contains Pfam domain ...    28   5.4  
At1g53270.1 68414.m06037 ABC transporter family protein contains...    27   7.2  
At5g49630.1 68418.m06141 amino acid permease 6 (AAP6) identical ...    27   9.5  
At4g34350.1 68417.m04881 LytB family protein contains Pfam profi...    27   9.5  
At4g01500.1 68417.m00193 DNA-binding protein, putative similar t...    27   9.5  
At1g59760.1 68414.m06729 ATP-dependent RNA helicase, putative si...    27   9.5  

>At1g71330.1 68414.m08233 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter
          Length = 324

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 440 KNNSGYKGEPVPQYVSQDMMAKAGEFSHIYWRY 538
           KN+    GEP  Q+V ++  AK      +YW+Y
Sbjct: 180 KNDKLDSGEPQRQFVQEEERAKGSVALDVYWKY 212


>At4g30560.1 68417.m04337 cyclic nucleotide-regulated ion channel,
           putative similar to cyclic nucleotide and
           calmodulin-regulated ion channel cngc6 GI:4581207 from
           [Arabidopsis thaliana]
          Length = 733

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = -2

Query: 438 CHSLDLILYQNYLFVDRCVLGGAYGFINVTDVFFSDDCEVEVSIRPSCDAAIKVSHISVR 259
           C +  L  ++N+LF     + G   +  + D     +C V  +  P  D  I +  +S  
Sbjct: 312 CSNSSLDCHRNFLFCGNEKMDGYAAWTTIKDSVLQLNCPVNTTDNPPFDFGIYLRALSSG 371

Query: 258 ISSGQTFL 235
           I S ++F+
Sbjct: 372 IVSSKSFV 379


>At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative
           strong similarity to ubiquitin conjugating enzyme
           [Lycopersicon esculentum] GI:886679; contains Pfam
           profile PF00179: Ubiquitin-conjugating enzyme
          Length = 192

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 160 TPIEGRPFQLDCVQPNAYP 216
           TP EG  FQ+D   P+ YP
Sbjct: 45  TPYEGGTFQIDITMPDGYP 63


>At2g18220.1 68415.m02123 expressed protein contains Pfam domain
           PF03715: Uncharacterised protein family (UPF0120)
          Length = 779

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 1/115 (0%)
 Frame = -2

Query: 486 LTY*GTGSPLYPELFFCHSLDLILYQNYLFVDRCVLGGAYGFINVTDVFFSDDCEVEVSI 307
           L + GTGS   P +      DL +      VD C  G    ++ +   F + D    +S 
Sbjct: 296 LHFWGTGSGALPVVSLLFLRDLCIRLGSDCVDDCFKGMYKAYV-LNCQFVNADKLKHISF 354

Query: 306 RPSCDAAIKVSHISVRISSGQTFLPS-NQGFRVSVRLHTVQLERPAFDWRFLVCL 145
             +C   +  + IS        F+       R ++   T +  R  + W+F+ CL
Sbjct: 355 LGNCFIELLGTDISAAYQHAFVFIRQLAMILREALNTKTKEAFRKVYQWKFIHCL 409


>At1g53270.1 68414.m06037 ABC transporter family protein contains
           similarity to ABC transporter GI:10280532 from [Homo
           sapiens]
          Length = 590

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -1

Query: 502 SHHILAYVLRDRLTFVPRVVLLSL 431
           ++ +L+YVL D L F+P ++++S+
Sbjct: 421 AYRVLSYVLADTLIFIPFLLIISM 444


>At5g49630.1 68418.m06141 amino acid permease 6 (AAP6) identical to
           amino acid permease 6 (AAP6) [Arabidopsis thaliana]
           GI:1769887
          Length = 481

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 243 TFLPSNQGFRVSVRLHTVQLERPAFDWRFLVCLRWRCDEVSLPEA 109
           +F P    F + + +   ++ + +F W +L  L W C  VSL  A
Sbjct: 417 SFWPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLVAA 461


>At4g34350.1 68417.m04881 LytB family protein contains Pfam profile:
           PF02401 LytB protein
          Length = 466

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +1

Query: 262 NADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKSVCTAKNAAVDEEVVLVEYEIKGVTK 441
           N  + D D +I    D    F +V K+DV      +  A  A VDE  VL + +++ V  
Sbjct: 157 NKRLEDMDVKIIPVEDSKKQFDVVEKDDV-----VILPAFGAGVDEMYVLNDKKVQIVDT 211

Query: 442 EQLWVQR 462
              WV +
Sbjct: 212 TCPWVTK 218


>At4g01500.1 68417.m00193 DNA-binding protein, putative similar to
           DNA-binding proteins from [Arabidopsis thaliana] RAV1
           GI:3868857, RAV2 GI:3868859; contains Pfam profile
           PF02362: B3 DNA binding domain
          Length = 328

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 196 VQPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG-NLYFTIVTKEDVSDIYKS 366
           V P+A P+P  T K RL G D     +  D R   G  G +    +V ++D    ++S
Sbjct: 242 VPPSAPPQPSTTKKLRLFGVDVEESSSSGDTRGEMGVAGYSSSSPVVIRDDDQSFWRS 299


>At1g59760.1 68414.m06729 ATP-dependent RNA helicase, putative
           similar to SP|P47047 ATP-dependent RNA helicase DOB1
           {Saccharomyces cerevisiae}, HUA enhancer 2 [Arabidopsis
           thaliana] GI:16024936; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 988

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 106 ISFRKTYLIASPAKTHEKTPIEGRPFQLDCVQPNA 210
           +SF + Y+  +P+  H K P +  PF LD  Q  A
Sbjct: 42  VSFPENYVPLAPS-VHNKPPAKDFPFTLDSFQSEA 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,161,994
Number of Sequences: 28952
Number of extensions: 273736
Number of successful extensions: 739
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)