Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P01
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   1.4  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    26   3.2  
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    25   5.6  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   7.3  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    25   7.3  
SPBC31F10.09c |nut2|med10|mediator complex subunit Med10|Schizos...    25   9.7  
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    25   9.7  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   9.7  

>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 118 VSLKFVHTLRLESVSYGHSLMQLQIAS 38
           VS +F H LRL+ V+  H +   +IAS
Sbjct: 291 VSTRFSHELRLKPVAVAHGIKNSEIAS 317


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 170 LGAVPRGAVPPRADRVLRDLQG 235
           LG V RG +P   DR+L  LQG
Sbjct: 476 LGHVQRGGIPCAYDRMLATLQG 497


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 531 HWSRNGAMQCSQGH 490
           HW  NGA+ C  GH
Sbjct: 191 HWGGNGAIGCGVGH 204



 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 119 GLVEVCAHLAPRVGFVWTLLDAVADS 42
           G+V   A +AP V  +W +L+ + DS
Sbjct: 104 GMVLQWASIAPAVDAIWHILNVIDDS 129


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 1   AAPAVSVRSTSTGKLSATASRSVHTKPTLGARCAQTSTRPG 123
           ++P+ +  STST   S+  S  + T+PT G    Q  +  G
Sbjct: 464 SSPSGTNSSTSTSSTSSKHSTGISTEPTTGEENKQDGSVGG 504


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 201 GGTAPRGTAPSGRGRGSAVGTPRSPMTRS 115
           GGT   G  PS    GSA+  P++   R+
Sbjct: 409 GGTGYTGVTPSHAANGSALAAPQATPFRT 437


>SPBC31F10.09c |nut2|med10|mediator complex subunit
           Med10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 182 PRGAVPPRADRVLRDLQGNAGVQRERNVRLP 274
           P  A+P   D ++RDL+    + R+ N  +P
Sbjct: 34  PSDAIPESLDTLIRDLKSLPDISRKVNNLIP 64


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 10/74 (13%)
 Frame = +3

Query: 72  YETDSRRKVCTNFNETWS-----SDCEVYRQRCLCLD-----HSELCRGAQYHHVQIEYY 221
           +ET     V TN  E +S     +    Y + CL  D     H E+ R   Y     ++Y
Sbjct: 131 FETLPALCVATNVEELYSVVLIETPLAPYFKDCLSADDLDEQHIEIIRNTLYKAYLEDFY 190

Query: 222 GTCREMPECSENEM 263
             C+++  C+ + M
Sbjct: 191 NFCKKIGACTADTM 204


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/56 (28%), Positives = 21/56 (37%)
 Frame = -1

Query: 294 ASRACAAGSLTFRSRCTPAFPCKSRSTRSARGGTAPRGTAPSGRGRGSAVGTPRSP 127
           AS   A  S  + S   P     S +  S+RG T    T P    RG    +  +P
Sbjct: 264 ASSTIAEVSPMYGSHAAPYASTPSAAVGSSRGSTPASATVPISPARGFPTTSAYNP 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,094,586
Number of Sequences: 5004
Number of extensions: 39768
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)