Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_P01
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37720.1 68418.m04541 RNA and export factor-binding protein, ...    33   0.095
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ...    31   0.51 
At3g56600.1 68416.m06294 phosphatidylinositol 3- and 4-kinase fa...    31   0.51 
At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N) f...    29   2.7  
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR...    28   3.6  
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR...    28   3.6  
At5g55350.1 68418.m06897 membrane bound O-acyl transferase (MBOA...    27   6.2  
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d...    27   8.3  
At4g29310.1 68417.m04190 expressed protein                             27   8.3  

>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
           putative transcriptional coactivator ALY, Mus musculus,
           EMBL:MMU89876
          Length = 288

 Score = 33.5 bits (73), Expect = 0.095
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -1

Query: 255 SRCTPAFPCKSRSTRSARGGTAPRGTAPSGRGRGSAVGTPRSPMTRS 115
           SR  P    +    R  RGG   RG    GRGRG   G  + P+ +S
Sbjct: 223 SRRLPIHNQQGGGMRGGRGGFRARGRGNGGRGRGGGRGNGKKPVEKS 269


>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
           WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
           contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
          Length = 711

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 158 LPRPLGAVPRGAVPPRADRVLRDLQGNAGVQRERNVRLPAAH 283
           LPRP+   P G +PP +  +   + G+ G+Q   N ++  +H
Sbjct: 608 LPRPMQMPPHGHMPPPSMPMSHQMPGSMGMQGGMNPQMSQSH 649


>At3g56600.1 68416.m06294 phosphatidylinositol 3- and 4-kinase
           family protein low similarity to 55 kDa type II
           phosphatidylinositol 4-kinase [Rattus norvegicus]
           GI:13660755; contains Pfam profile PF00454:
           Phosphatidylinositol 3- and 4-kinase
          Length = 533

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -3

Query: 175 SEWSRQRQRCRYTSQSDDQVSLKFVHTLRLESVSYGHSLMQLQIASPCSLIS 20
           S++SR  QRCR  S ++   +    +T +    +  HSL    +++PC  IS
Sbjct: 13  SQFSRSSQRCRLQSLTNLDFNFLGFNTKQTNLSASSHSLNNRSVSTPCFSIS 64


>At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N)
           family protein similar to SP|Q9RHV9 Lysyl-tRNA
           synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Bacillus
           stearothermophilus}; contains Pfam profile: PF00152 tRNA
           synthetases class II (D, K and N)
          Length = 602

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 246 TPAFPCKSRSTRSARGGTAPRGTAPSGRGRGSA 148
           +PA  C S ++ S+   T    + PSGR R SA
Sbjct: 40  SPALRCASAASSSSSSATTAETSKPSGRNRRSA 72


>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 278

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -1

Query: 222 RSTRSARGGTAPRGTAPSGRGRGSAVGTPRSPMTRS 115
           RS+  ARG  + RG    GRG G   G  R P  RS
Sbjct: 85  RSSHDARGSYSGRGRG--GRGGGDGGGRERGPSRRS 118



 Score = 27.9 bits (59), Expect = 4.7
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 291 SRACAAGSLTFRSRCTPAFPCKSRS-TRSARGGTAPRGTAPSGRGRGSAVGTPRSPMTRS 115
           SR+ + G    +SR     P +SRS +RS     +P+  A S R R  A  T RSP +RS
Sbjct: 199 SRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPK--AKSLR-RSPAKSTSRSPRSRS 255

Query: 114 R 112
           R
Sbjct: 256 R 256


>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 178

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -1

Query: 222 RSTRSARGGTAPRGTAPSGRGRGSAVGTPRSPMTRS 115
           RS+  ARG  + RG    GRG G   G  R P  RS
Sbjct: 85  RSSHDARGSYSGRGRG--GRGGGDGGGRERGPSRRS 118


>At5g55350.1 68418.m06897 membrane bound O-acyl transferase (MBOAT)
           family protein / wax synthase-related contains
           similarity to wax synthase  wax synthase - Simmondsia
           chinensis, PID:g5020219 similar to wax synthase
           [gi:5020219] from Simmondsia chinensis
          Length = 345

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 415 WCDLDAHDNDRFVSR--HELFPIRAPLMSLGALHRAVPRPVR 534
           WCDL+ H N+ ++S    + +  R  LM    L  AV  PVR
Sbjct: 172 WCDLEPHFNEPYLSTSLQDFWGRRWNLMVPAILRPAVYLPVR 213


>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
           domain-containing protein contains Pfam profiles:
           PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
           family associated with various cellular activities (AAA)
          Length = 956

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 222 RSTRSARGGTAPRGTAPSGRGRGSAVG 142
           +S    RGG A  G +  GRGRG   G
Sbjct: 154 KSAGRGRGGRAAPGASTGGRGRGGGRG 180


>At4g29310.1 68417.m04190 expressed protein
          Length = 424

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 243 PAFPCKSRSTRSARGGTAPRGTAPSGRG 160
           P F CK  S R+ R  + P G   S RG
Sbjct: 186 PVFSCKFSSDRNGRSRSLPSGFTYSSRG 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,770,521
Number of Sequences: 28952
Number of extensions: 237641
Number of successful extensions: 867
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)