Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_O24
(563 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 30 0.27
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 0.82
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 28 1.1
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 27 2.5
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po... 26 3.3
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 25 5.8
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 5.8
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 5.8
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 25 7.7
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 25 7.7
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 7.7
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 29.9 bits (64), Expect = 0.27
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 223 TPHPPNATRKCNTFVTFHNSITALIP-PGTRTNSDVCSSRR*KNIISCEKARQKTVRADK 47
TP PP+ K +TFV H+S T P P T +N+ S + T++ +K
Sbjct: 399 TPLPPSTPSKPSTFVRPHSSSTDSPPSPSTPSNTQTDSYFIQRENTPTNHNSIPTIQLEK 458
Query: 46 PAKDLLR 26
+ D LR
Sbjct: 459 SSMDFLR 465
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 28.3 bits (60), Expect = 0.82
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -2
Query: 259 SAASAVTSRHTRTPHPPNATRKCNTFVTFHNSITALIPPGTRTNS 125
S+AS TS H+ T N T T HNS T +PP T N+
Sbjct: 50 SSASTETSTHSVTS--TNITSIVPPPSTSHNSTTTTVPPTTSMNT 92
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -2
Query: 262 CSAASAVTSRHTRTPHPPNATRKCNTFVTFHNSITALIPP 143
C +T+ HT HP A +K + F+ ++ + I P
Sbjct: 694 CDGKGILTAAHTSLKHPAAAYQKDDNFILVNDHLRVTIAP 733
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 141 PGGISAV-IELWKVTKVLHLRVAFGGWGVRVWRDVTADAAEQS 266
PGG S +E WK ++ + F GW + +D+ D E++
Sbjct: 40 PGGGSVTYLEAWKAIELANEIFGFNGWSSSI-QDIHVDYVEET 81
>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 469 GYYRYLSNSCGNMNRNPNAYTPFTV 395
GYY Y NS NP Y PFTV
Sbjct: 24 GYYAY-KNSNKPPGLNPEIYAPFTV 47
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 217 GEC-ACGVTSQRTRPNRVRRAPTPRRCATSQCYS 315
G+C AC V + N + +P ++C + C+S
Sbjct: 556 GQCFACAVVKRTLERNNITASPECQQCYYNYCWS 589
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = -2
Query: 253 ASAVTSRHTRTPHPPNATRKCNTFVTFHNSITALIPPGTRTN 128
AS + P PPNA C + IT+ IP + N
Sbjct: 19 ASTILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVN 60
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 552 INANTSSMNVLNALYMKARHGTPPTRAP 469
++AN + N + L KAR+ T PT+ P
Sbjct: 485 LSANAAKTNYQSYLTNKARNATQPTQPP 512
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 463 YRYLSNSCGNMNRNPNAY 410
+RY NSCG +N P +Y
Sbjct: 274 HRYRCNSCGIVNEVPQSY 291
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 25.0 bits (52), Expect = 7.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 357 EPHKSWYSWALRSTVN 404
+PH+ W SW+L V+
Sbjct: 114 QPHREWASWSLNQQVH 129
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 214 PPNATRKCNTFVTFHNSITALIPPGT 137
P N +F T H+S T +PP T
Sbjct: 104 PYNLLSNTPSFTTSHSSSTTFVPPAT 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,174
Number of Sequences: 5004
Number of extensions: 39407
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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