Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_O24
(563 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1048 - 21998214-21998413,21998507-21998674,21998758-219989... 137 7e-33
05_07_0017 + 27070332-27071886,27072238-27072344,27072427-27072531 30 1.5
04_04_0470 + 25474029-25475525 29 1.9
02_04_0646 + 24710348-24711838 29 1.9
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 28 5.9
03_06_0347 + 33293915-33294104,33295143-33295284,33295365-332954... 27 7.8
01_06_0353 - 28647452-28647477,28647568-28649134 27 7.8
>04_03_1048 -
21998214-21998413,21998507-21998674,21998758-21998977,
21999571-21999761,21999869-21999962,22000257-22000500,
22001314-22001411,22001509-22001600,22001695-22001809,
22001890-22002036,22003031-22003255
Length = 597
Score = 137 bits (331), Expect = 7e-33
Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 KNDVSFWRRKRSFAGLSARTVFWRAFSQLIIFFYLLDEQTSLLVLVPGGISAVIELWKVT 182
KND+ FW + +S GLSA++V QLIIF YLLD +TS ++L GI IE WK+
Sbjct: 337 KNDIQFWNKNKSMEGLSAKSVVLNFVCQLIIFLYLLDNETSWMILGSSGIGVCIEFWKIG 396
Query: 183 KVLHLRVAFGGWGVRV-WRDVTADAAEQSTARADAEAMRYLSMLLYPLCIAGAVYSLIYE 359
K +H+ + G + +RD A+ T DA AM+YL+ +L L ++YSL YE
Sbjct: 397 KAMHVEIDRSGKIPMLRFRD-RESYAQNKTKEYDAIAMKYLTYVLLFLVFCFSIYSLKYE 455
Query: 360 PHKSWYSWALRSTVNGVYAFGFLFMLPQLFDKYR 461
HKSWYSW L S + VY FGF+ M PQLF Y+
Sbjct: 456 KHKSWYSWILSSLTSCVYMFGFIMMCPQLFINYK 489
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 479 VGGVPWRAFMYKAFNTFIEDVFAFIITM 562
V +PWR YK NT I+D+FAF+I M
Sbjct: 493 VAHMPWRQMTYKFLNTIIDDLFAFVIKM 520
>05_07_0017 + 27070332-27071886,27072238-27072344,27072427-27072531
Length = 588
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 196 CGLRSAGGECACGVTSQRTRPNRVRRAPTPRRCATSQCYST 318
CG+ G G+T ++ NR+RRAP R A C ST
Sbjct: 190 CGISHTGSFKDLGMTVLVSQVNRLRRAPLSRPIAGVGCAST 230
>04_04_0470 + 25474029-25475525
Length = 498
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 246 ADAAEQSTARADAEAMRYLSMLLYPLCIAGAVYSLIYEPHKSWYSWALRSTVNGVYAFG 422
A AA T+ + AE ++++ L+Y + G VY ++ S WA S +G FG
Sbjct: 128 AIAAAGITSGSIAERTQFVAYLIYSAFLTGFVYPVVSHWIWSADGWASASRTSGPLLFG 186
>02_04_0646 + 24710348-24711838
Length = 496
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 246 ADAAEQSTARADAEAMRYLSMLLYPLCIAGAVYSLIYEPHKSWYSWALRSTVNGVYAFG 422
A AA T+ + AE ++++ L+Y + G VY ++ S WA S +G FG
Sbjct: 128 AIAAAGITSGSIAERTQFVAYLIYSAFLTGFVYPVVSHWIWSADGWASASRTSGSLLFG 186
>04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 27.9 bits (59), Expect = 5.9
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = +3
Query: 126 LLVLVP--GGISAVIELWKVTKVLHLRVAFGGWGVRVWRDVTADAAEQSTARADAEAMRY 299
+ VL+P GG S + V+ + + G WR AA S + +E
Sbjct: 1819 VFVLMPTGGGKSLTYQSQNVS-IFEVGTGIKRVGRNDWRKANISAAYLSASMEWSEQQEI 1877
Query: 300 LSMLLYPLCIAGAVYSLIY-EPHKSWYSWALRSTVNGVYAFGFL 428
L L+ P C Y L+Y P K S AL + +Y+ G L
Sbjct: 1878 LRELMSPTC----TYKLLYVTPEKIAKSDALLRQLENLYSRGHL 1917
>03_06_0347 +
33293915-33294104,33295143-33295284,33295365-33295485,
33295590-33295652,33296524-33296553,33297411-33297905
Length = 346
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 226 ACGVTSQRTRPNRVRRAPTPRRCATSQCYSTRSA*RELFIHSSMNH 363
+CG + + RP+ +R C TS + RE IH +H
Sbjct: 274 SCGASRRGVRPSFIRSHCATATCTTSSTDGWTNGVRETVIHVKAHH 319
>01_06_0353 - 28647452-28647477,28647568-28649134
Length = 530
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 196 CGLRSAGGECACGVTSQRTRPNRVRRAPTPRRCATSQCYST 318
CG+ G G+T ++ NR+RRAP R C ST
Sbjct: 194 CGISHTGSFKDLGMTVLVSQVNRLRRAPLSRPINGVGCAST 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,560,496
Number of Sequences: 37544
Number of extensions: 283829
Number of successful extensions: 949
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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