Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O24
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein con...   133   7e-32
At5g23575.1 68418.m02766 transmembrane protein, putative similar...   133   9e-32
At5g51850.1 68418.m06428 expressed protein similar to unknown pr...    29   2.8  
At3g03310.1 68416.m00329 lecithin:cholesterol acyltransferase fa...    28   5.0  
At5g67540.2 68418.m08516 glycosyl hydrolase family protein 43 co...    27   6.5  
At5g67540.1 68418.m08517 glycosyl hydrolase family protein 43 co...    27   6.5  
At5g01190.1 68418.m00024 laccase, putative / diphenol oxidase, p...    27   8.7  

>At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein
           contains Pfam profile PF05602: Cleft lip and palate
           transmembrane protein 1 (CLPTM1)
          Length = 590

 Score =  133 bits (322), Expect = 7e-32
 Identities = 64/153 (41%), Positives = 86/153 (56%)
 Frame = +3

Query: 3   KNDVSFWRRKRSFAGLSARTVFWRAFSQLIIFFYLLDEQTSLLVLVPGGISAVIELWKVT 182
           KND+ FW + +S  GLSA++V      Q IIF YLLD  TS ++L   G+   IE WK+ 
Sbjct: 348 KNDIQFWNKNKSMEGLSAKSVVLNFICQFIIFLYLLDNDTSWMILASSGVGVCIEFWKIG 407

Query: 183 KVLHLRVAFGGWGVRVWRDVTADAAEQSTARADAEAMRYLSMLLYPLCIAGAVYSLIYEP 362
           K + + V   G   R+        A   T   D  A+++LS +L  L +  ++YSL YE 
Sbjct: 408 KAMRIEVDRSGMIPRLRFHDRESYASNKTKEYDDIAIKFLSYVLLLLVVGFSIYSLAYER 467

Query: 363 HKSWYSWALRSTVNGVYAFGFLFMLPQLFDKYR 461
           HKSWYSW L S  + VY FGF+ M PQLF  Y+
Sbjct: 468 HKSWYSWILSSLTSCVYMFGFIMMCPQLFINYK 500



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 479 VGGVPWRAFMYKAFNTFIEDVFAFIITM 562
           V  +PWR   YK  NT I+D+FAF+I M
Sbjct: 504 VAHLPWRQMTYKFLNTIIDDLFAFVIKM 531


>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
           cleft lip and palate transmembrane protein 1 [Homo
           sapiens] GI:4039014; contains Pfam profile PF05602:
           Cleft lip and palate transmembrane protein 1 (CLPTM1)
          Length = 593

 Score =  133 bits (321), Expect = 9e-32
 Identities = 64/153 (41%), Positives = 86/153 (56%)
 Frame = +3

Query: 3   KNDVSFWRRKRSFAGLSARTVFWRAFSQLIIFFYLLDEQTSLLVLVPGGISAVIELWKVT 182
           KND+ FW + +S  GLSA++V      Q +IF YLLD  TS ++L   G+   IE WK+ 
Sbjct: 350 KNDIQFWNKNKSMEGLSAKSVVLNFICQFVIFLYLLDNDTSWMILASSGVGVCIEFWKIG 409

Query: 183 KVLHLRVAFGGWGVRVWRDVTADAAEQSTARADAEAMRYLSMLLYPLCIAGAVYSLIYEP 362
           K + + V   G   R+        A   T   D  A+++LS +L  L I  ++YSL YE 
Sbjct: 410 KAMRIEVDRSGMIPRLRFHDRESYASNKTKEYDDIAIKFLSYVLLLLVIGLSIYSLAYER 469

Query: 363 HKSWYSWALRSTVNGVYAFGFLFMLPQLFDKYR 461
           HKSWYSW L S  + VY FGF+ M PQLF  Y+
Sbjct: 470 HKSWYSWILSSLTSCVYMFGFIMMCPQLFINYK 502



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 479 VGGVPWRAFMYKAFNTFIEDVFAFIITM 562
           V  +PWR   YK  NT I+D+FAF+I M
Sbjct: 506 VAHLPWRQMTYKFLNTIIDDLFAFVIKM 533


>At5g51850.1 68418.m06428 expressed protein similar to unknown
           protein (emb|CAB81354.1)
          Length = 590

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
 Frame = -2

Query: 268 VLCSAASAVTSRHTR--TPHPPNATRKCNTFVTFHNSITALIPPGTRTNSDVCSSRR*KN 95
           V CS  +  + +  +  T H PN++                +  G + + +    R+ K 
Sbjct: 256 VSCSPRTRFSEKENKQSTSHKPNSSSSSRPEPIIQKPKPTPVILGEKQSQNRVKQRQLKP 315

Query: 94  IISCEKARQKTVRADKPA--KDLLRRQKDT 11
           I  C+KA  +T R  KP+   D+  R+++T
Sbjct: 316 INLCKKAETETRRPIKPSPTSDIRNRKRET 345


>At3g03310.1 68416.m00329 lecithin:cholesterol acyltransferase
           family protein / LACT family protein weak similarity to
           LCAT-like lysophospholipase (LLPL) [Homo sapiens]
           GI:4589720; contains Pfam profile PF02450:
           Lecithin:cholesterol acyltransferase
           (phosphatidylcholine-sterol acyltransferase)
          Length = 447

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 396 TVNGVYAFGFLFMLPQLFDKYR*YPVRALAAFRGAPSCTKRS 521
           ++ G+    F+++ P+ F KY    +     F+GAP C   S
Sbjct: 177 SMGGLMVSCFMYLHPEAFSKYVNKWITIATPFQGAPGCINDS 218


>At5g67540.2 68418.m08516 glycosyl hydrolase family protein 43
           contains similarity to xylanase GI:2645416 from
           [Caldicellulosiruptor saccharolyticus]
          Length = 471

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
 Frame = -3

Query: 225 ALPTRRTQPASVTLSSLSITQ*QH*SHP-VRGLI-----VMSVRPEDKRI*SVARRRARK 64
           +L +R+       +SS  +    H +HP VR LI     V+ + P  KR    ++RR+RK
Sbjct: 44  SLYSRKDNNIHQQVSSDQLQVVHHLAHPIVRELIRVEEEVLRMPPPRKRSPRTSKRRSRK 103

Query: 63  PYALINRQRISCDARKIRH 7
           P  L+  +    D   IRH
Sbjct: 104 PIPLV--EEFLDDKSPIRH 120


>At5g67540.1 68418.m08517 glycosyl hydrolase family protein 43
           contains similarity to xylanase GI:2645416 from
           [Caldicellulosiruptor saccharolyticus]
          Length = 466

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
 Frame = -3

Query: 225 ALPTRRTQPASVTLSSLSITQ*QH*SHP-VRGLI-----VMSVRPEDKRI*SVARRRARK 64
           +L +R+       +SS  +    H +HP VR LI     V+ + P  KR    ++RR+RK
Sbjct: 39  SLYSRKDNNIHQQVSSDQLQVVHHLAHPIVRELIRVEEEVLRMPPPRKRSPRTSKRRSRK 98

Query: 63  PYALINRQRISCDARKIRH 7
           P  L+  +    D   IRH
Sbjct: 99  PIPLV--EEFLDDKSPIRH 115


>At5g01190.1 68418.m00024 laccase, putative / diphenol oxidase,
           putative similar to diphenol oxidase [Nicotiana
           tabacum][GI:1685087]
          Length = 553

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 259 SAASAVTSRHTRTPHPPNATRKCNTFVTFHNSITALIPP 143
           S   + T   T +P P NAT   NTFV    S+ +   P
Sbjct: 301 SGTLSATPTKTTSPPPQNATSVANTFVNSLRSLNSKTYP 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,196,796
Number of Sequences: 28952
Number of extensions: 211606
Number of successful extensions: 636
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)