Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O21
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.092
SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)                   28   4.6  
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)                  28   4.6  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   6.1  
SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)             27   8.0  
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          27   8.0  

>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 33.9 bits (74), Expect = 0.092
 Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
 Frame = +1

Query: 145  TSSRVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVY- 321
            T   V+ +  + TIN    +   +K  + GN +  L A  S    N  K G     + Y 
Sbjct: 658  TIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDKDVVISYS 714

Query: 322  DNVNRHGATLTNTH-IPGIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNT 498
            DN+N   A  T+   IPG   K     KVN   +     +  A  +    T SH   ++ 
Sbjct: 715  DNMNNSKAANTDQFGIPGSDSKTGSDSKVNAKASGQTSNAMDASNSDTRETSSHAIGSDQ 774

Query: 499  VG 504
            +G
Sbjct: 775  IG 776


>SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 293  NLIWLVRSTEPRALSL*FSFPVIGTLTIAPEVPSELIVS 177
            NL  +  S  PR LS    FP +G+ TI P   S +IVS
Sbjct: 1187 NLDGVDSSVMPRELSQVLRFPFLGSFTIRPLAQSSVIVS 1225


>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
          Length = 808

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +1

Query: 370 GIGDKLSVAGKVNLFHNNDHDLSAKAFAT 456
           G+ D L++ G VN+FHN   DL++++ +T
Sbjct: 612 GLSD-LTIDGHVNIFHNQGTDLNSQSGST 639


>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
          Length = 916

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
 Frame = +1

Query: 184 INSDGTSGAMVKVPITGN-ENHKLSALGSVD----LTNQIKLGAATAGLVYDNVNRHGAT 348
           I+SD    + ++V  +GN +N  LS + S        N I    +T+ L + N   HG+T
Sbjct: 632 ISSDYHGDSSLRVHSSGNHDNTSLSGVSSGSHGNFSGNGIYRSRSTSNLSHGN---HGST 688

Query: 349 LTNTHIPGIGDKLSVAGKVNLFHNN 423
            T     GI   L+     N FH N
Sbjct: 689 TTRNMSSGIQSNLAFGRLSNGFHEN 713


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +2

Query: 407 TCFITTTMIYPRRRSRPEICPPFPIYHQPTLLVVVSNICSRTRSVHQRAP 556
           TC   T   Y R   R   C PF  +   T  V  SN C  TR+ +   P
Sbjct: 26  TCRFETC--YERDTGRATPCMPFTSFMSLTRNVTTSNTCGTTRAKYCELP 73


>SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 481 NGKWWAYFWSRTPSRINH 428
           N +WW Y + RTP    H
Sbjct: 13  NSEWWMYLYHRTPEGATH 30


>SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)
          Length = 733

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 493 WLMVNGKWWAYFWSRTPSRINHG 425
           WL+ N  W   FW+  P   +HG
Sbjct: 165 WLLSNTNWMRKFWTSDPKFRSHG 187


>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 284 WLVRSTEPRALSL*FSFPVIGTLTIAPEVPSELIV 180
           W+V ++EP  LS      +I T +I P  P   I+
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFPPTAII 506


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,623,268
Number of Sequences: 59808
Number of extensions: 351986
Number of successful extensions: 835
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)