Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O20
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      29   0.28 
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    29   0.36 
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    28   0.84 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   1.9  
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    26   2.6  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    26   3.4  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    26   3.4  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   4.5  
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    25   5.9  
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|...    25   5.9  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    25   5.9  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   7.8  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    25   7.8  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   7.8  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 3/124 (2%)
 Frame = +3

Query: 57  LNGAEIVFNPSATIAAEAGSEYM--WNIEARNAAITNCYFTAAINRVGYEEFPNEFTSAD 230
           LNGA+++      +A    + Y   W++  +  A  NC    A NRVG +E  +      
Sbjct: 164 LNGADLL-----VVATNWENPYSDDWDLVTKARAFENCIPLVAANRVGTDEKLS------ 212

Query: 231 GKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLISVMDLNMNRQIKDRRCYYMTQRL 410
                     F+G S   GP G     L   ++G++   +DL+  + ++     +   R+
Sbjct: 213 ----------FFGHSKIIGPTGKVIKALDEEKEGVISYTVDLDDAKPLRKNYYTFFEDRM 262

Query: 411 -DMY 419
            D+Y
Sbjct: 263 PDLY 266


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 235 SPRTKTWGCSTGPVTSVDLMESGARDCREPEMD 333
           +PR++     + PV S++L +SG+R+C   E+D
Sbjct: 261 APRSQANPFFSSPVRSLELFKSGSRNCLHLELD 293


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 398 HVVTTTIFDLPVHIQIHNADQ 336
           H+   ++ DLP +IQIH+ DQ
Sbjct: 362 HIPNLSLIDLPGYIQIHSEDQ 382


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -3

Query: 139 ASIFHIYS-LPASAAMVADGLNTIS 68
           AS F +Y+ LP S+AMV DG++ IS
Sbjct: 24  ASYFLLYNNLPLSSAMVHDGVHLIS 48


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -2

Query: 356 QIHNADQQSISGSRQSRAPDSIRSTEVTGPVEQPQVFVRGLPVSRSELIREFLITDP 186
           Q+   D++++S    SRA + +RS     P+     F +  P++  +L+ + L  DP
Sbjct: 244 QLGTPDEETLSHISSSRAQEYVRSLPKQRPIPFETNFPKANPLA-LDLLAKLLAFDP 299


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 206 EFLITDPVDSRREVAISYSSISCF-DIPH 123
           E  ++DPV    E A+  SSI CF D P+
Sbjct: 665 EIRVSDPVARFCETAVDTSSIKCFSDTPN 693


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 279 SNWTRRTAPSLCARASRQPK*THSGIPHN 193
           ++W +   P L   +SR  K T S +P N
Sbjct: 392 TDWNQYVIPPLATPSSRNSKSTQSAVPEN 420


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 218 HFG*REARAQRLGAVLRVQ 274
           H+G R   AQRLG +LR +
Sbjct: 638 HYGSRRQEAQRLGRILRAK 656


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 190 TLLIAAVK*QLVIAAFLASIFHIYSLPASAAMVADGLNTISAPFNPNIIQFRT 32
           T+L+ A   Q +    L  ++  +  PA+AA+      TISA     I  FRT
Sbjct: 110 TMLLPANTVQFLGYEQLLPLYSDWGFPAAAAIAGASARTISATIVSPIELFRT 162


>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
           Pef1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 160 IATSRRLSTGSVMRNSRMSSLRLTGSPRTKTW 255
           +AT R L  GS   +  +   RL G+P  ++W
Sbjct: 195 MATGRPLFAGSNNEDQLLKIFRLLGTPTEQSW 226


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 116 TSRFSCYGRRRVKYNLCSI*SEHHPI*DM 30
           TSRFSC G   + +  CS  SE+  + D+
Sbjct: 132 TSRFSCNGNTLLHFMGCSTFSEYTVVADI 160


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 81  NPSATIAAEAGSEYMWNIEARNAAITNCYFTAAINRV 191
           +P   +A EA  +   + +A+N AI N  +  A+NR+
Sbjct: 702 HPWLIVAREAAVDDNDSFQAKNRAIYNQIYPEAVNRL 738


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 268 GPVTSVDLMESGARDCREPEMD 333
           GP T V  +  G   C+ PEM+
Sbjct: 84  GPATKVGAIVGGQTSCKAPEMN 105


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 172 RRLSTGSVMRNSRMSSLRLTGSPRTKTW 255
           R L TG+V+++   + LR++  PR + W
Sbjct: 183 RDLKTGAVIKDVSEAVLRISCIPRVEDW 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,849
Number of Sequences: 5004
Number of extensions: 42574
Number of successful extensions: 97
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)