Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_O20
(480 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 204 3e-53
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 31 0.49
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 31 0.64
09_06_0051 - 20498261-20498362,20498491-20498612,20498694-204987... 29 2.0
02_01_0092 - 650534-650553,650638-651013,651125-651349 28 3.4
03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411 28 4.5
04_04_0604 - 26546363-26548363 27 6.0
03_06_0124 - 31830797-31831371,31831510-31831532,31832143-318322... 27 6.0
12_01_0216 + 1644769-1644926,1645705-1645837,1645966-1646182,164... 27 7.9
03_06_0153 - 32024787-32024892,32024997-32025079,32025159-320259... 27 7.9
01_01_1111 - 8791925-8792649,8793506-8793890,8794341-8794618,879... 27 7.9
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 204 bits (498), Expect = 3e-53
Identities = 99/155 (63%), Positives = 112/155 (72%)
Frame = +3
Query: 6 VNICFGRHHVLNWMMFGLNGAEIVFNPSATIAAEAGSEYMWNIEARNAAITNCYFTAAIN 185
VNIC+GRHH LNW+ FGLNGAEIVFNPSAT+ SE MW IEARNAAI N YF +IN
Sbjct: 257 VNICYGRHHPLNWLAFGLNGAEIVFNPSATVGEL--SEPMWPIEARNAAIANSYFVGSIN 314
Query: 186 RVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLISVMDLNMN 365
RVG E FPN FTS DGKP H D G FYGSS+F PD P LSR RDGL+IS MDLN+
Sbjct: 315 RVGTEVFPNPFTSGDGKPQHADFGHFYGSSHFSAPDASCTPSLSRYRDGLMISDMDLNLC 374
Query: 366 RQIKDRRCYYMTQRLDMYADXLRKVLDLDYEPQVV 470
RQIKD+ + MT R D YA L + L D++PQV+
Sbjct: 375 RQIKDKWGFRMTARYDTYASLLSEYLKPDFKPQVI 409
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 31.1 bits (67), Expect = 0.49
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Frame = +3
Query: 57 LNGAEIVFNPSATIAAEA-----GSEYMWNIEARNAAITNCYFTAAINRVGYEEFPNEFT 221
L GAEI+F P+A I +E S W + A N A NR+G E E
Sbjct: 174 LQGAEILFYPTA-IGSEPQDNNLDSREHWKRVMQGHAGANLVPLVASNRIGRETVETE-- 230
Query: 222 SADGKPAHKDLGL-FYGSSYFCGPDGVRCPGLSRTRDGLLISVMDLNMNRQIKDRRCYYM 398
H + + F+G+S+ GP G + + +L++ DL+ + + +
Sbjct: 231 -------HGESTITFFGNSFIAGPTGEIVKLANDKDEDVLVAEFDLDEIKSTRHGWGIFR 283
Query: 399 TQRLDMY 419
+R D+Y
Sbjct: 284 DRRPDLY 290
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 30.7 bits (66), Expect = 0.64
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 163 ATSRRLSTGSVMRNSRMSSLRLTGSPRTKTW--GCSTG-PVTSVDLMES 300
A+S R++ G +SR ++ L PR TW GC G + DL+E+
Sbjct: 512 ASSPRVAAGDAFPSSRYDAMLLREDPRNLTWLHGCDDGEEIDGGDLVEA 560
>09_06_0051 -
20498261-20498362,20498491-20498612,20498694-20498741,
20498832-20498934,20499038-20499112,20499362-20499478,
20499591-20499656,20500527-20500632,20501196-20501275,
20501372-20501443
Length = 296
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 160 IATSRRLSTGSVMRNSRMSSLRLTGSPRTKTWG 258
++T+ + + +R + S+LRL GSPR WG
Sbjct: 1 MSTAAAAAASTSLRPASQSALRLAGSPRRWCWG 33
>02_01_0092 - 650534-650553,650638-651013,651125-651349
Length = 206
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 172 RRLSTGSVMRNSRMSSLRLTGSPRTKTWGCST 267
RR S+GS + RMSS+ +GSP +G S+
Sbjct: 158 RRDSSGSAADDDRMSSMSCSGSPDDDDYGGSS 189
>03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411
Length = 1311
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 3 AVNICFGRHHVLNWMMFGLNGAEIVFNPS 89
A + H+VL W F LNGA NPS
Sbjct: 917 ATGLSIAYHYVLGWS-FSLNGAAPALNPS 944
>04_04_0604 - 26546363-26548363
Length = 666
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 3 AVNICFGRHHVLNWMMFGLNGAEIVFNPSA 92
A I F RH+VL W F +NGA N S+
Sbjct: 244 ATGILFCRHYVLGW-SFKMNGAAPALNISS 272
>03_06_0124 -
31830797-31831371,31831510-31831532,31832143-31832271,
31833287-31834842
Length = 760
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 184 TGSVMRNSRMSSLRLTGSPRTKTWGCSTG 270
TG V R R++ LRLTG RT+ S G
Sbjct: 62 TGVVCRAGRVAELRLTGLRRTRAGARSQG 90
>12_01_0216 +
1644769-1644926,1645705-1645837,1645966-1646182,
1646241-1646310,1646311-1646482,1646559-1646753
Length = 314
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 164 AISYSSISCFDIPHILTSRF 105
AIS SS SCF +P +LT F
Sbjct: 35 AISASSSSCFAVPELLTPGF 54
>03_06_0153 -
32024787-32024892,32024997-32025079,32025159-32025978,
32026122-32026327,32026887-32026975,32027132-32027192,
32027297-32027416
Length = 494
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 323 GSRQSRAPDSIRSTEVTGPVEQPQVFVRGLPVSRSELIREFLITD 189
G R+ + S V+ PV+ P+V R P S++ L FL D
Sbjct: 17 GRRERERDQLVSSPSVSPPVDAPKVGERKRPPSKNALSAVFLRED 61
>01_01_1111 -
8791925-8792649,8793506-8793890,8794341-8794618,
8794998-8795163
Length = 517
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 305 APDSIRSTEVTGPVEQPQVFVRGLPVSRSE 216
AP S+ STE P +P V V PV+ +E
Sbjct: 182 APPSVISTEQLNPAAEPVVGVEAAPVTVAE 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,755,934
Number of Sequences: 37544
Number of extensions: 294382
Number of successful extensions: 730
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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