Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O20
         (480 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64370.1 68418.m08086 beta-ureidopropionase, putative / beta-...   207   3e-54
At2g27450.2 68415.m03318 carbon-nitrogen hydrolase family protei...    36   0.011
At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protei...    36   0.011
At3g62900.1 68416.m07066 expressed protein ; expression supporte...    29   1.6  
At1g72270.1 68414.m08355 expressed protein                             29   1.6  
At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein si...    27   5.0  
At5g65720.1 68418.m08271 cysteine desulfurase, mitochondrial (NI...    27   5.0  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   6.5  
At5g55720.1 68418.m06946 pectate lyase family protein similar to...    27   8.7  
At4g29490.1 68417.m04208 Xaa-Pro dipeptidase, putative / prolida...    27   8.7  
At4g12100.1 68417.m01922 expressed protein cullin-4A - Homo sapi...    27   8.7  
At1g53390.1 68414.m06052 ABC transporter family protein similar ...    27   8.7  
At1g10190.1 68414.m01149 expressed protein similar to hypothetic...    27   8.7  

>At5g64370.1 68418.m08086 beta-ureidopropionase, putative /
           beta-alanine synthase, putative similar to beta-alanine
           synthase [Dictyostelium discoideum] GI:14334061;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 408

 Score =  207 bits (505), Expect = 3e-54
 Identities = 100/158 (63%), Positives = 115/158 (72%)
 Frame = +3

Query: 3   AVNICFGRHHVLNWMMFGLNGAEIVFNPSATIAAEAGSEYMWNIEARNAAITNCYFTAAI 182
           AVNIC+GRHH LNW+ FGLNGAEIVFNPSAT+     SE MW IEARNAAI N YF  +I
Sbjct: 245 AVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGEL--SEPMWPIEARNAAIANSYFVGSI 302

Query: 183 NRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLISVMDLNM 362
           NRVG E FPN FTS DGKP H D G FYGSS+F  PD    P LSR +DGLLIS MDLN+
Sbjct: 303 NRVGTEVFPNPFTSGDGKPQHNDFGHFYGSSHFSAPDASCTPSLSRYKDGLLISDMDLNL 362

Query: 363 NRQIKDRRCYYMTQRLDMYADXLRKVLDLDYEPQVVHE 476
            RQ KD+  + MT R ++YAD L K +  D++PQVV +
Sbjct: 363 CRQYKDKWGFRMTARYEVYADLLAKYIKPDFKPQVVSD 400


>At2g27450.2 68415.m03318 carbon-nitrogen hydrolase family protein
           low similarity to beta-alanine synthase [Drosophila
           melanogaster] GI:14334063; contains Pfam profile
           PF00795: hydrolase, carbon-nitrogen family
          Length = 326

 Score = 36.3 bits (80), Expect = 0.011
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
 Frame = +3

Query: 57  LNGAEIVFNPSATIAAEAGSEYM-----WNIEARNAAITNCYFTAAINRVGYEEFPNEFT 221
           L GAEI+F P+A I +E   + +     W    +  A  N     A NR+G      E  
Sbjct: 200 LQGAEILFYPTA-IGSEPQDQGLDSRDHWRRVMQGHAGANVVPLVASNRIG-----KEII 253

Query: 222 SADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLISVMDLNMNRQIKDRRCYYMT 401
             +  P+      FYG+S+  GP G          + +L++  DL+M +  +     +  
Sbjct: 254 ETEHGPSQIT---FYGTSFIAGPTGEIVAEADDKSEAVLVAQFDLDMIKSKRQSWGVFRD 310

Query: 402 QRLDMY 419
           +R D+Y
Sbjct: 311 RRPDLY 316


>At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protein
           low similarity to beta-alanine synthase [Drosophila
           melanogaster] GI:14334063; contains Pfam profile
           PF00795: hydrolase, carbon-nitrogen family
          Length = 299

 Score = 36.3 bits (80), Expect = 0.011
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
 Frame = +3

Query: 57  LNGAEIVFNPSATIAAEAGSEYM-----WNIEARNAAITNCYFTAAINRVGYEEFPNEFT 221
           L GAEI+F P+A I +E   + +     W    +  A  N     A NR+G      E  
Sbjct: 173 LQGAEILFYPTA-IGSEPQDQGLDSRDHWRRVMQGHAGANVVPLVASNRIG-----KEII 226

Query: 222 SADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLISVMDLNMNRQIKDRRCYYMT 401
             +  P+      FYG+S+  GP G          + +L++  DL+M +  +     +  
Sbjct: 227 ETEHGPSQIT---FYGTSFIAGPTGEIVAEADDKSEAVLVAQFDLDMIKSKRQSWGVFRD 283

Query: 402 QRLDMY 419
           +R D+Y
Sbjct: 284 RRPDLY 289


>At3g62900.1 68416.m07066 expressed protein ; expression supported by
            MPSS
          Length = 1401

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = -2

Query: 326  SGSRQSRAPDSIRSTEVTGPVEQPQVFVRGLPVSRSELIREFLITDPVDSRR 171
            S SR      SIRS    GP    +    G P SR+++I    I  P DS R
Sbjct: 1036 SSSRSKEKSQSIRSDSRDGPRHIEKKIYDGSPDSRADMIVRPNIPKPHDSER 1087


>At1g72270.1 68414.m08355 expressed protein
          Length = 2777

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 257  PQVFVRGLPVSRSELIREFLITDPVDSRREVAISYSSISCFDIPHILTSRFSCY 96
            P +F+RGL ++ S  +RE  +   +D     + +    S  DIP I +  FS +
Sbjct: 1241 PDLFMRGLELTVSRNLREGTVDSEIDFADHSSTTEKIKSKMDIPDIESLAFSVF 1294


>At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein similar
            to lysosomal alpha-mannosidase SP:O09159 from [Mus
            musculus]
          Length = 1047

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 353  IHNADQQSISGSRQSRAPDSIRSTEVTGPVEQPQVFVRGLPVSRSELIRE 204
            I    + S+S +++          +V G  EQP   +RG PV +S L+ E
Sbjct: 973  IKEVTEMSLSANQEKVKMKEKMKWKVEGEAEQPSSPLRGGPVDKSTLVVE 1022


>At5g65720.1 68418.m08271 cysteine desulfurase, mitochondrial (NIFS)
           identical to Cysteine desulfurase, mitochondrial
           precursor  (SP:O49543)  {Arabidopsis thaliana};
           identical to cDNA GI:12656131; contains Pfam profile
           PF00266: aminotransferase, class V
          Length = 453

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = -2

Query: 287 STEVTGPVEQPQVFVRGLPVSRSELIREFLITDPVDSRREVAISYSSISCFDIPHILTSR 108
           +TEV    E   + ++G+ +S   L  +   T P+D R   A++ S I  +  PH   SR
Sbjct: 33  ATEVN--YEDESIMMKGVRISGRPLYLDMQATTPIDPRVFDAMNASQIHEYGNPH---SR 87

Query: 107 FSCYG 93
              YG
Sbjct: 88  THLYG 92


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 350 HNADQQSISGSRQSRAPDSIRS 285
           HNA+    +GS Q R P S+RS
Sbjct: 538 HNAEANGETGSAQHRIPSSVRS 559


>At5g55720.1 68418.m06946 pectate lyase family protein similar to
           pectate lyase 1 GP:6606532 from [Musa acuminata]
          Length = 392

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 172 RRLSTGSVMRNSRMSSLRLTGSPRTKTWGC 261
           RRLST +V  NS  SS    G+P  + W C
Sbjct: 29  RRLST-TVTSNSTASSCSANGNPIDECWRC 57


>At4g29490.1 68417.m04208 Xaa-Pro dipeptidase, putative / prolidase,
           putative / imidodipeptidase, putative similar to
           SP|P12955 Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro
           dipeptidase) (Proline dipeptidase) (Prolidase)
           (Imidodipeptidase) {Homo sapiens}; contains Pfam
           profiles PF00557: metallopeptidase family M24, PF05195:
           Aminopeptidase P, N-terminal domain
          Length = 333

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 174 AAINRVGYEEFPNEFTSADGKPAHKDLGL---FYGSSYFC 284
           +A+   G+   PN+ T  DG  A  D+G    FYGS   C
Sbjct: 249 SAVLHYGHAAAPNDRTFEDGDLALLDMGAEYHFYGSDITC 288


>At4g12100.1 68417.m01922 expressed protein cullin-4A - Homo
           sapiens, PID:d1034112
          Length = 434

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/63 (22%), Positives = 29/63 (46%)
 Frame = +3

Query: 264 YGSSYFCGPDGVRCPGLSRTRDGLLISVMDLNMNRQIKDRRCYYMTQRLDMYADXLRKVL 443
           Y   +    + + C  +S+ R+   I  +D N  +  +DR   Y+ +  D+    ++ +L
Sbjct: 33  YRLPFTLSDENLSCLPISQAREPPPIFNLDPNSVKDTQDRNKLYLAKAWDLLKPAIKIIL 92

Query: 444 DLD 452
           D D
Sbjct: 93  DDD 95


>At1g53390.1 68414.m06052 ABC transporter family protein similar to
           ATP-binding cassette, sub-family G, member 2
           (Placenta-specific ATP- binding cassette transporter)
           (Breast cancer resistance protein) SP:Q9UNQ0 from [Homo
           sapiens]
          Length = 1092

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 253 WGCSTGPVTSVDLMESGARDCREPEMDC 336
           WGCS  P   VDL  S  +D  E   +C
Sbjct: 168 WGCSVDPTEQVDLQNS--KDFPERRRNC 193


>At1g10190.1 68414.m01149 expressed protein similar to hypothetical
           protein GB:CAB10284 contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 396

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 42  WMMFGLNGAEIVFNPSATIAAEAGSEYMWNIEARNAA 152
           W+ FG    E+ F PS+     +G+   W  EA +A+
Sbjct: 283 WLQFGNAAEEVGFWPSSRFHQSSGNLVEWGGEAYSAS 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,025,234
Number of Sequences: 28952
Number of extensions: 231740
Number of successful extensions: 645
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)