Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O18
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48140.1 68418.m05946 polygalacturonase, putative / pectinase...    27   8.6  
At1g20530.1 68414.m02558 hypothetical protein                          27   8.6  

>At5g48140.1 68418.m05946 polygalacturonase, putative / pectinase,
           putative strong similarity to polygalacturonase PGA3
           [Arabidopsis thaliana] GI:3152948; contains PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 395

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 397 KTFNVEQXEISCNVHCDFITXVKLRGST 480
           KTFN ++  IS  +  DF+T  K+RG T
Sbjct: 130 KTFNCKKLPIS--IRFDFVTDAKIRGIT 155


>At1g20530.1 68414.m02558 hypothetical protein
          Length = 614

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 230 YSRRHNSGNIVPTPGRPA 177
           YSRR+ SG I P P  PA
Sbjct: 130 YSRRYESGTITPPPPPPA 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,738,863
Number of Sequences: 28952
Number of extensions: 109064
Number of successful extensions: 209
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)