Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O17
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   1.4  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    27   2.5  
SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr 1...    26   4.3  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.7  
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    25   5.7  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.5  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   7.5  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    25   7.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.5  
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    25   9.9  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    25   9.9  

>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 477 VSLKFVHTLRLESVSYGHSLMQLQIAS 397
           VS +F H LRL+ V+  H +   +IAS
Sbjct: 291 VSTRFSHELRLKPVAVAHGIKNSEIAS 317


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -2

Query: 305 VTHSGSRRHELSQP-PGIVSRPGSPPCRSRGAPTRRCP 195
           ++ S S  H  SQ  PG  S P  P   + G   ++CP
Sbjct: 66  ISSSSSEPHHTSQSTPGETSSPVCPVSGAHGGADKKCP 103


>SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 18/70 (25%), Positives = 27/70 (38%)
 Frame = +2

Query: 197 DISESEHLENGMAESLDERRFQEAERARVSEILNESRDAPDNEINLDDPCMKVHCSAGRV 376
           +I   E  E      L+   F EAERA  + I +  + AP+ ++ L  P        G V
Sbjct: 3   NIRNIERSEVEEVSKLEAICFPEAERASFARIKDRVKRAPEIQLGLFAPTQHTSTLIGHV 62

Query: 377 CEINEHGEAI 406
                  E +
Sbjct: 63  LTSRTGSETV 72


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 359  CSAGRVCEINEHGEAICNCIKEC 427
            C+A R+C++ E       C+ +C
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 329 NLDDPCMKVHCSAGRVCEINEHGEAICNCIKECPYETDSRRKVCTNFNE 475
           NL     K++   G +  +  HG  I  CIK+    +  + K  T FNE
Sbjct: 105 NLHKGAAKIYSMGGVIAAVC-HGPVILPCIKDSTGFSIVKGKTVTAFNE 152


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 342 GSSRLISLSGASRDSFRISETRALSAS 262
           G+ +L     +SRD+FR ++T+A S+S
Sbjct: 47  GNKKLKESQFSSRDNFRTTQTQASSSS 73


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 360 AAPAVSVRSTSTGKLSATASRSVHTKPTLGARCAQTSTRPG 482
           ++P+ +  STST   S+  S  + T+PT G    Q  +  G
Sbjct: 464 SSPSGTNSSTSTSSTSSKHSTGISTEPTTGEENKQDGSVGG 504


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = +2

Query: 176 SAGLPRGDISESEHLEN-GMAESLDERRFQEAERARVSEILNESRDAPDNEINLDDPCMK 352
           S G     IS  E  +N G+ E  D     E++  +  E  +     P     LDD  + 
Sbjct: 12  SNGFSEEYISHPERNDNQGIVEITDLVFSSESKLTQRKESRDSKTFVPSFLEELDDDHLH 71

Query: 353 VHCSAGRVCEINEHGEAICNCIKEC 427
              + G +  +N  GE +   +++C
Sbjct: 72  ELVTNGGILYMNSLGEGVSGSVRKC 96


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 375  SVRSTSTGKLSATASRSVHTKPTLGARCAQTSTRPGHRTARCTDSAASASNTRS 536
            SV  +ST  + ATAS +  +  ++ A     S+     TA  TDS+ S+  T S
Sbjct: 982  SVSGSSTSSV-ATASATDSSTSSIAAASVTGSSTSSVATASVTDSSTSSVATAS 1034



 Score = 25.0 bits (52), Expect = 7.5
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +3

Query: 315  LTMKSILTIRA*KCTAAPAVSVRSTS-TGKLSAT-ASRSVHTKPTLGARCAQTSTRPGHR 488
            +T  S  ++     T +   SV + S TG LS++ A+ SV   PT     A +ST     
Sbjct: 1048 VTGSSTSSVATASATDSSTSSVATASITGSLSSSIATASVTGSPTSSVT-AVSSTSSVEG 1106

Query: 489  TARCT-DSAASASNTRSCAAGRS 554
            TA  T  +AASA+   S AA  S
Sbjct: 1107 TASSTIAAAASAATLSSDAASGS 1129



 Score = 24.6 bits (51), Expect = 9.9
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +3

Query: 357  TAAPAVSVRSTSTGKLSATASRSVHTKPTLGARCAQTSTRPGHRTARCTDSAASASNTRS 536
            ++    SV  +ST  + ATAS +  +  ++       S+     TA  TDS+ S+  T S
Sbjct: 1015 SSVATASVTDSSTSSV-ATASATDSSTSSIAVASVTGSSTSSVATASATDSSTSSVATAS 1073

Query: 537  CAAGRS 554
                 S
Sbjct: 1074 ITGSLS 1079


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 478 GLVEVCAHLAPRVGFVWTLLDAVADS 401
           G+V   A +AP V  +W +L+ + DS
Sbjct: 104 GMVLQWASIAPAVDAIWHILNVIDDS 129


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 233 AESLDERRFQEAERARVSEILNESRDAPDNEIN 331
           A+ LDER F+  E    S+ L  ++DA  N IN
Sbjct: 450 AQFLDEREFETDEEEEESQYLLSTKDA-INAIN 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,702
Number of Sequences: 5004
Number of extensions: 38513
Number of successful extensions: 120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)