Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O15
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   1.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   2.3  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   2.3  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   3.0  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   4.0  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   4.0  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    23   9.2  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 213  IYHMGEIYNCSLSASSAHYATATVAILSRVVWTTVPED 326
            I+H     +C L ASS   ++ +  +L+RV+W    +D
Sbjct: 2943 IHHACNAVSCFLQASSLLSSSNSKPLLTRVLWLLSVDD 2980


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 207  STIYHMGEIYNCSLSASSAHYATATVAILS--RVVWTT 314
            S IYHM    +CSL   +A+Y +  +  +S  +  WT+
Sbjct: 1947 SQIYHMSPEESCSLPIETAYYYSIHIRPVSEFKFNWTS 1984


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 330 PNPPGPSSILPETKWLP 280
           P PP    I PE  WLP
Sbjct: 698 PYPPSSKDIRPEAPWLP 714


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 228 EIYNCSLSASSAHYATATVAILSR-VVW-TTVPEDL 329
           +IY C  SAS   Y  A ++I  + +VW   +P++L
Sbjct: 389 KIYKCLASASEEVYKEAVLSIRGKLIVWERNLPDEL 424


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 309  SILPETKWLPSRSHSARKTPTVN 241
            ++LP+ KW+ SR H       +N
Sbjct: 1202 NVLPKNKWILSRMHKMENGSPIN 1224



 Score = 24.6 bits (51), Expect = 4.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 46   SILPETKWLPSRSHSARKTPTVN 114
            ++LP+ KW+ SR H       +N
Sbjct: 1202 NVLPKNKWILSRMHKMENGSPIN 1224


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 216 YHMGEIYNCSLSASSAHYATATV 284
           +H G I   S +A S H ATA++
Sbjct: 520 FHTGRILGMSWNAKSTHLATASL 542


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 42  RPGGFGLRC 16
           RP GFGLRC
Sbjct: 314 RPAGFGLRC 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,248,000
Number of Sequences: 5004
Number of extensions: 19973
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)