Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O15
         (333 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical pr...    30   0.35 
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   1.4  
Z73978-1|CAA98294.1|  236|Caenorhabditis elegans Hypothetical pr...    26   5.7  
U11279-3|AAF99909.1|  423|Caenorhabditis elegans T box family pr...    26   5.7  
Z81068-1|CAB02982.1|  232|Caenorhabditis elegans Hypothetical pr...    25   10.0 

>Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical
           protein F42G4.3a protein.
          Length = 603

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 330 PNPPGPSSILPETKWLPSRSHSARKTPTVNNY 235
           P PP P  +LP  + LPSR       P  NN+
Sbjct: 4   PPPPPPPPLLPSGEILPSRKWKTEDAPRRNNH 35


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +1

Query: 4    TEGSATQTKSSGPS----SILPETKWLPSRSHSARKTPTVN 114
            TEGS+T   SS  S    S +P T   P+ S S   TPT N
Sbjct: 1238 TEGSSTSGSSSATSLSSSSPVPSTSQSPNPSTSGSSTPTPN 1278


>Z73978-1|CAA98294.1|  236|Caenorhabditis elegans Hypothetical
           protein ZC302.3 protein.
          Length = 236

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 228 EIYNCSLSASSAHYATATVAILSRVV 305
           + +NC  +AS++HY   ++  L RVV
Sbjct: 128 QYWNCRKTASNSHYEQRSLIYLDRVV 153


>U11279-3|AAF99909.1|  423|Caenorhabditis elegans T box family
           protein 2 protein.
          Length = 423

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 327 NPPGPSSILPETKWLPSRSHSARKTPTVNNYKFHP 223
           +PPG ++ LP     PS S+S    PT+   K  P
Sbjct: 265 SPPGKTASLPTHSPHPSESNSEDDEPTLKKCKPEP 299


>Z81068-1|CAB02982.1|  232|Caenorhabditis elegans Hypothetical
           protein F25H5.2 protein.
          Length = 232

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 77  DGSHFVSGSMDDGPEDLVC 21
           D  HFV+   DD PE+ VC
Sbjct: 55  DQPHFVADPTDDFPEERVC 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,989,903
Number of Sequences: 27780
Number of extensions: 115536
Number of successful extensions: 313
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)