Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O14
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    26   2.9  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   5.0  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   6.6  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    25   8.7  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   8.7  

>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 347  TIIKHLTEKNKGENKATMFCLGLGDDVNNKFLRKLCLL--NDGFSRRI 484
            TI  +L   N    KA    LG     + KF+++LC L  +D + + +
Sbjct: 858  TIASNLNSPNADVMKAAAIALGSLTSQSEKFIKELCALYVSDAYDKEL 905


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 376 IFFCEMFNDSFSTRYTDSWIAVCQEYDN 293
           I++  MFN  F  +   +W+A   +YD+
Sbjct: 909 IYYLRMFNLPFHVKQLYTWLAPISKYDS 936


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 328 DSWIAVCQEYDNRFQGFD 275
           + WI V Q+YD+ F+  D
Sbjct: 609 EGWIKVKQDYDDEFESLD 626


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 181 LSSISSSIFVDEIHRYGQGRVDV 113
           L+   + IF+DE+HR+ + + D+
Sbjct: 174 LTGRKTIIFLDEVHRFNRAQQDI 196


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 65  EKAKIIISRLESIGGTDINTALTVAVDLINK 157
           E A +++S LE++  T+       AVD +NK
Sbjct: 84  EYAHVLLSPLENLAATEETVVRDKAVDSLNK 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,786
Number of Sequences: 5004
Number of extensions: 41791
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)