Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_O14
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 32 0.23
02_01_0721 - 5373449-5373603,5373912-5373981,5374473-5374620,537... 32 0.23
01_06_1313 - 36212524-36213669 30 1.2
01_06_1312 - 36205549-36206649,36207558-36207883,36209083-362091... 29 1.6
01_01_1097 + 8682250-8682337,8682406-8682474,8683014-8683222,868... 29 2.9
09_02_0212 + 5820866-5821031,5821172-5821224,5821512-5821639,582... 28 5.0
05_03_0416 + 13684604-13688050 28 5.0
08_02_0676 - 19943638-19943895,19944296-19944632,19944711-19945063 27 6.6
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 27 8.8
07_03_0776 + 21417476-21417691,21417775-21417855,21417941-214183... 27 8.8
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 32.3 bits (70), Expect = 0.23
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +2
Query: 263 VKEKVKTLEPIIIFLTDGDPTVGVTSTKTIIKHLTEKNKGENKATMFCLGLGDDVNNKFL 442
++EK P+I+ + + K+++ H T KNK ++F L D + L
Sbjct: 1815 IREKYPDRIPVIVEKAERSDIPDIDKKKSVLNHFTFKNKSSATLSLFVLASYVDTSFFML 1874
Query: 443 RKLCLLN 463
K+ L N
Sbjct: 1875 LKIVLAN 1881
>02_01_0721 -
5373449-5373603,5373912-5373981,5374473-5374620,
5374755-5374870,5374955-5375033,5375163-5375233,
5376201-5376344,5376439-5376592,5376906-5376941,
5377145-5377226,5377315-5377408,5377993-5378062,
5378177-5378274,5378745-5378827,5379335-5379428,
5379533-5380036
Length = 665
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 8/46 (17%)
Frame = +2
Query: 314 GDPTVGVTSTKTIIKHL-TEKNKGENKA-------TMFCLGLGDDV 427
G+PTVG T +TI++HL T+K + N+A T+ +G+ +DV
Sbjct: 261 GEPTVGKTQPETILRHLTTKKGQAYNRAQVKRDVETILTMGIMEDV 306
>01_06_1313 - 36212524-36213669
Length = 381
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = -2
Query: 138 ATVKAVLMSVPPMDSSLLMIILAFSIFSGVA*Y 40
AT A+L+ VPP D SLL+I L S+ G A Y
Sbjct: 266 ATAMALLVKVPPRDLSLLVINL--SVLEGTAIY 296
>01_06_1312 -
36205549-36206649,36207558-36207883,36209083-36209198,
36210472-36211577
Length = 882
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = -2
Query: 156 LLMRSTATVKAVLMSVPPMDSSLLMIILAFSIFSGVA*Y 40
LL + AT A+L+ +PP SLL+ IL SI G+A Y
Sbjct: 248 LLSLAVATAGALLVKMPPPALSLLVTIL--SILEGIAIY 284
>01_01_1097 +
8682250-8682337,8682406-8682474,8683014-8683222,
8683468-8683657,8684619-8685010,8685610-8686098
Length = 478
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 371 KNKGENKATMFCLGLGDDVNNKFLRKLCLLNDGFSRRIYEA 493
+NKG +AT+F L D N F + CLL G +Y+A
Sbjct: 77 RNKGHGEATIFTLRELADATNNFSTE-CLLGRGGFGSVYKA 116
>09_02_0212 +
5820866-5821031,5821172-5821224,5821512-5821639,
5821728-5821833,5821998-5822132,5822211-5822262,
5822383-5822447,5823984-5824090,5824596-5824792,
5825145-5825260,5825368-5825453,5825525-5825597,
5826886-5826977,5827069-5827207,5827275-5827369,
5827804-5827978,5828345-5828491
Length = 643
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 8 EIQPKLDLVAPYQATPENIEKAKIIISRLESIGGTDINTALTV 136
E+ P DLVA + ++P+ E I+ SIGG D+ L +
Sbjct: 392 ELHP--DLVATHASSPQVFEGHPFIVEAGISIGGKDVKHGLNI 432
>05_03_0416 + 13684604-13688050
Length = 1148
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 347 TIIKHLTEKNKGENKATMFCLGLGDDVNNKFLRKLCLLN---DGFSRRIY 487
TI+ L + N+GEN + +GLG + +C +N + F RI+
Sbjct: 65 TIVSMLVDSNEGENCWIVSVVGLGGSGKTTLAKHICHVNKIKELFKERIF 114
>08_02_0676 - 19943638-19943895,19944296-19944632,19944711-19945063
Length = 315
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 311 DGDPTVGVTSTKTII---KHLTEKNKGENKATMFCLGLGDD 424
DG+P +S+ TI+ K +TE + + T+ LG+G+D
Sbjct: 112 DGNPEFWCSSSDTIVSFAKKMTELERAVERMTLEGLGVGED 152
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 480 RREKPSLRRHNFRKNLLFTSSPKPRQNIV 394
+ +K RH F+ L TS P+ RQN+V
Sbjct: 180 KEKKWKAMRHTFKSKGLPTSHPEKRQNVV 208
>07_03_0776 +
21417476-21417691,21417775-21417855,21417941-21418342,
21418457-21418621,21418729-21419460,21419542-21419748
Length = 600
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Frame = +1
Query: 97 IHWWYRH-QHGLDRSGG 144
IHWWYRH H + + G
Sbjct: 382 IHWWYRHPSHAAELAAG 398
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,531,484
Number of Sequences: 37544
Number of extensions: 267424
Number of successful extensions: 618
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -