Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O14
         (511 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.3  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_2181| Best HMM Match : RGS (HMM E-Value=0.11)                       29   2.9  
SB_13497| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   5.1  
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   6.8  

>SB_978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 287 EPIIIFLTDGDPTVGVTSTKTIIKHLTEKNKGENKATMFCLGLGDDVNNKFLRK 448
           E +I F+   + T  + S + + K L +K K   KAT  C G   DVN K   K
Sbjct: 304 EIVITFVKPPEQTKELLSLQALTKRLGQK-KDLVKATNLCSGRSSDVNKKRAHK 356


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 308  TDGDPT-VGVTSTKTIIKHLTEKNKGENKATMFCLGLGDDVNNKFLRKLC 454
            +D + T VG T+T  +     +   GEN    + + L D  N +F  KLC
Sbjct: 1322 SDAESTSVGNTATAAVAATTAKPRIGENVGPEYIVRLADSGNRQFYCKLC 1371


>SB_2181| Best HMM Match : RGS (HMM E-Value=0.11)
          Length = 1313

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
 Frame = -2

Query: 477  REKPSLRRHNFRKNLLFTSSPKPRQNIVALFSPLFFSVRCLMIVLVLVTPTVG-----SP 313
            R+KP +      +++L     + R++IVA+   +  +   ++I++++V   +      SP
Sbjct: 1031 RQKPKVSAPEVVEDILLKRRLQRRRDIVAIIIIIIINAIVIIIIIIIVMIIIAIVLLTSP 1090

Query: 312  SVRNMIIGSRVLTFS 268
             V N I+ SR ++ S
Sbjct: 1091 PVLNYILNSRWVSSS 1105


>SB_13497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 17  PKLDLVAPYQATPENIEKAKIIISRLESIGGTDINTALTVAVDLINKYAGGNAR 178
           P  DL+  ++A  EN  +   + S +  +   D+N+   V  D+I+ +AG N +
Sbjct: 19  PSRDLLMGWKADGENFSEGFKVFSVIHKLVD-DVNSVKIVTGDVIHDFAGENVK 71


>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +2

Query: 293  IIIFLTDGDPTVGVTSTKTIIKHLTEKNKGENKATMFCLGLGDDVNNKFLRKL 451
            ++I +T+G  + G    K ++K L EK     K  +  +G+G DVN   L ++
Sbjct: 1230 VLIVMTNGRTSQGSLPYKDVMKPLKEK-----KVDVIAVGIGPDVNEAELLEI 1277


>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1572

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 293  IIIFLTDGDPTVGVTSTKTIIKHLTEKNKGENKATMFCLGLGDDVN 430
            ++I +T+G  + G    K ++K L EK     K  +  +G+G DVN
Sbjct: 1489 VLIVMTNGRTSQGSLPYKDVMKPLKEK-----KVDVIAVGIGPDVN 1529


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,571,437
Number of Sequences: 59808
Number of extensions: 311567
Number of successful extensions: 635
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)