Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O14
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77132-1|CAB00859.1|  278|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL032625-1|CAA21523.1|  326|Caenorhabditis elegans Hypothetical ...    28   4.5  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    27   7.9  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    27   7.9  

>Z77132-1|CAB00859.1|  278|Caenorhabditis elegans Hypothetical
           protein F54D1.1 protein.
          Length = 278

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 205 CSRATVNILSSISSSIFVDEIHRYGQGRVDVGTTNGFESTD 83
           C  A + +LS   S +F DE++R+GQG +D G  + +   D
Sbjct: 27  CKNARM-LLSKEISKVF-DELYRHGQGFIDNGYGSDYNKND 65


>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
           protein Y54E10A.11 protein.
          Length = 1446

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +2

Query: 308 TDGDPTVGVTSTKTIIKHLTE----KNKGENKATMFCLGLGDDVNNKFLRKL-CLLNDGF 472
           TDG PTV + + K I + LT+     +KG  K   F L    DV N        ++ DGF
Sbjct: 107 TDGSPTVRMLTMKVISQFLTKLKKSASKGLKKIIPFVLFAKSDVTNGVAAAASAVIRDGF 166


>Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical
           protein W06D12.2 protein.
          Length = 444

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 18  QSWI*LHRIKPHRRILRRLKLSSVDSNPLVVPTSTRP*P 134
           + WI   R K  RR ++ L+  S+D  PL+  +ST P P
Sbjct: 177 RQWIQSLRQKLRRRKVQSLEEGSIDKTPLMETSSTPPSP 215


>AL032625-1|CAA21523.1|  326|Caenorhabditis elegans Hypothetical
           protein Y37H9A.2 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 42  IKPHRRILRRLKLSSVDSNPLVVPTS 119
           I PHRR  R L+ ++++SN + VP+S
Sbjct: 28  ISPHRRSKRVLERNTLNSNRVAVPSS 53


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 412  TEAEHSSFVLSFIFFCEMFNDSFSTRYTDSWIAVCQEYDNRFQGFDFF 269
            T  EH+    +++FF +   +   T YT     V ++YDNR   +DFF
Sbjct: 5019 TTKEHN--FANYLFFLQHLVNKDETEYTGQETYVREKYDNR--DWDFF 5062


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 412  TEAEHSSFVLSFIFFCEMFNDSFSTRYTDSWIAVCQEYDNRFQGFDFF 269
            T  EH+    +++FF +   +   T YT     V ++YDNR   +DFF
Sbjct: 5011 TTKEHN--FANYLFFLQHLVNKDETEYTGQETYVREKYDNR--DWDFF 5054


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,613,919
Number of Sequences: 27780
Number of extensions: 237059
Number of successful extensions: 611
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)