Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O14
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51000.1 68418.m06323 F-box family protein contains F-box dom...    31   0.34 
At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogen...    29   2.4  
At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogen...    28   4.2  
At4g21210.1 68417.m03066 expressed protein contains Pfam domain ...    27   5.5  
At2g38770.1 68415.m04760 expressed protein                             27   5.5  
At3g13790.1 68416.m01742 beta-fructosidase (BFRUCT1) / beta-fruc...    27   9.7  

>At5g51000.1 68418.m06323 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 378

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -1

Query: 487 VDTSRETIVKKAQLS*KLIVYIVS*TEAEHSSFVLSFIFFCEMFNDS 347
           V+T ++ I+   ++S K  VY ++    +  +F+LSF F CE F  S
Sbjct: 190 VNTDQDHIIDNQRVSLKGNVYFIAHDILKEEAFLLSFDFTCERFGPS 236


>At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogenase
           family protein contains PFAM zinc-binding dehydrogenase
           domain PF00107
          Length = 427

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 68  KAKII-ISRLESIGGTDINTALTVAVDLINKYAGGNARQDV 187
           KA +I +S+  S+G  DIN  +   + +I  Y GG ARQD+
Sbjct: 340 KAVMIGLSQAGSVGEIDINRLVRRKIKVIGSY-GGRARQDL 379


>At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogenase
           family protein contains PFAM zinc-binding dehydrogenase
           domain PF00107
          Length = 427

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 68  KAKII-ISRLESIGGTDINTALTVAVDLINKYAGGNARQDV 187
           KA +I +S+  S+G  DIN  +   V +I  Y GG ARQD+
Sbjct: 340 KAVMIGLSQAGSVGEIDINRLVRRKVWVIGSY-GGRARQDL 379


>At4g21210.1 68417.m03066 expressed protein contains Pfam domain
           PF03618: Domain of unknown function (DUF299)
          Length = 403

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 47  ATPENIEKAKIIISRLESIGGTDINTAL 130
           A PEN+EKA I++  +   G T ++T L
Sbjct: 255 ALPENLEKADIVLVGVSRTGKTPLSTYL 282


>At2g38770.1 68415.m04760 expressed protein
          Length = 1509

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 317 DP-TVGVTSTKTIIKHLTEKNKGENKATMFCLGLGDDVNNKFLRKLCLLNDGFSRRIYE 490
           DP T       ++I  + EK + EN A   C    DD+  KFL+K+  L +G    I E
Sbjct: 120 DPETATFEHVMSMILMINEKFR-ENVAAWICFHDRDDLFKKFLQKVLRLKEGRDLTIAE 177


>At3g13790.1 68416.m01742 beta-fructosidase (BFRUCT1) /
           beta-fructofuranosidase / cell wall invertase identical
           to beta-fructofuranosidase GI:402740 from [Arabidopsis
           thaliana]
          Length = 584

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +2

Query: 290 PIIIFLTDGDPTVGVTSTKTIIKHLTEKNKGENKATMFCLGLGDDVNNKFLRKLCLLNDG 469
           P+  F ++G  T        I+KH+ + +  + K   + +G  D V +KF+       DG
Sbjct: 252 PVTRFGSNGVETSSFGEPNEILKHVLKISLDDTKHDYYTIGTYDRVKDKFVPDNGFKMDG 311

Query: 470 FSRR 481
            + R
Sbjct: 312 TAPR 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,931,542
Number of Sequences: 28952
Number of extensions: 219641
Number of successful extensions: 494
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)