Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O13
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    33   0.040
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    27   2.6  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.6  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   8.1  

>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 32.7 bits (71), Expect = 0.040
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -3

Query: 557 RNKICNKYYSYNNNLNINTGMARL--FCTIYNQKKYHIFMS 441
           +N++ +K+  Y NNLN  T   RL   C ++N +K  +F++
Sbjct: 123 KNQLVHKWEQYTNNLNYRTLKFRLGKMCLLFNDEKTRMFLA 163


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 261 ISFF--IRVTAVCDVFSLLQYIDRWTSANYRIS 169
           ISFF  + +T+  D F+++  I RWT A   IS
Sbjct: 35  ISFFHDVPLTSDKDTFNMVTEIPRWTQAKCEIS 67


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 557 RNKICNKYYSYNNNLNINTGMARLFCTIYNQ 465
           RNK+C KY  Y+N + I+  +A+ F T+  Q
Sbjct: 507 RNKLCEKYLFYSNFIWISFIVAQ-FVTLCTQ 536


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 52  KINMNSVRILIFVAICVMFVSTVTAWDFFKELEGVGQRVRDAIISAGPAIDVLQ 213
           K++    + L+FV  CV  V+      +FK     G ++  A+  AGP  DVLQ
Sbjct: 261 KLDSFVYQCLLFVGKCVNRVTPYLERFWFKC--HYGSKLGTALQVAGPGFDVLQ 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,013
Number of Sequences: 5004
Number of extensions: 36166
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)