Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_O12
(312 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 29 0.16
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 28 0.28
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 0.86
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 25 2.0
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom... 25 3.5
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 25 3.5
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 3.5
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 24 4.6
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 24 4.6
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 24 6.1
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein... 24 6.1
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 24 6.1
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 24 6.1
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 23 8.1
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 23 8.1
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 29.1 bits (62), Expect = 0.16
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Frame = +3
Query: 105 VERQKKVLSLFQDVDQVNVDDE-YYKIGKD-YD--VEANIDXYTNKKAVEEFL 251
VER+K++ +L Q D + ++DE YY + D Y+ EA +TN++ V+E +
Sbjct: 225 VERRKQIYTLAQKHDIIILEDEPYYYLQMDAYEGKPEAADKAFTNEQFVKELI 277
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 28.3 bits (60), Expect = 0.28
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 120 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVE 242
K L + + + YYK+ K Y +AN D K VE
Sbjct: 89 KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129
>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 132
Score = 26.6 bits (56), Expect = 0.86
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 3 KTVLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKV----LSLFQDVDQVNVDDE 170
K ++ A +I +++ + +H +D V + QK+ S D D+ V DE
Sbjct: 28 KLIMKFADMIKNARNNEDNEDNHHINYEDESDVGTDEQKQQEGVNSSAVSDTDESAVSDE 87
Query: 171 YYKIGKDYDVEA 206
+ +I +++ ++A
Sbjct: 88 FMQIKEEFPMKA 99
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 2.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 105 VERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEEFLK 254
+ R+KK+L+L + D + V+DE Y + D +++ K FLK
Sbjct: 224 LSRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSLNPAQQKCDGSTFLK 273
>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 470
Score = 24.6 bits (51), Expect = 3.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 105 VERQKKVLSLFQDVDQVNVDDEYY 176
+ER+KK L+L + D + V+DE Y
Sbjct: 221 LERRKKFLTLAKKYDIIIVEDEPY 244
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 24.6 bits (51), Expect = 3.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 114 QKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNK 230
Q+ + S+ D Q+++DD YKI E N D +K
Sbjct: 38 QEIIHSISPDTFQLDIDDILYKIYSKIPPEENNDALFSK 76
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 24.6 bits (51), Expect = 3.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 147 DQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEEFLK 254
DQ N + K+ + + E N D Y NK A++EFL+
Sbjct: 991 DQKNALEIICKVIR-FPGENNADVYFNKCAIKEFLE 1025
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 24.2 bits (50), Expect = 4.6
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = +3
Query: 138 QDVDQVNVDDEYYKIGK 188
Q+ + N+DDEY+++G+
Sbjct: 65 QEETETNLDDEYHRLGE 81
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 24.2 bits (50), Expect = 4.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 138 QDVDQVNVDDEYYKIGKDYDVEANID 215
Q+V Q+N +DEY + + D EA ID
Sbjct: 55 QNVMQMNFEDEYSEFSNE-DDEAEID 79
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 23.8 bits (49), Expect = 6.1
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 51 VVSPKTYHFKTK-DVDAVFVERQKKVLSLFQDVDQVNVD 164
V+ PKT+H+K + F + QKK+ DV D
Sbjct: 234 VIEPKTFHYKNGISISMKFDKDQKKL--FINDVSTTKYD 270
>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 246
Score = 23.8 bits (49), Expect = 6.1
Identities = 7/20 (35%), Positives = 16/20 (80%)
Frame = +3
Query: 114 QKKVLSLFQDVDQVNVDDEY 173
++++ SL ++++ N+DDEY
Sbjct: 189 RERLRSLADEIEEENIDDEY 208
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 23.8 bits (49), Expect = 6.1
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 105 VERQKKVLSLFQDVDQVNVDDEYYKIGKDYD-VEANIDXYTNKKAV 239
V+ K ++ + + VNV EY+K D V A + N KA+
Sbjct: 823 VQEHVKAINAAEQKEVVNVVTEYFKENPDMSFVVAKVPISANPKAL 868
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 23.8 bits (49), Expect = 6.1
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 108 ERQKKVLSLFQDVDQVNVDDEYYKIG---KDYDVEANIDXYTNKKAVEEFLKL 257
E KV + F+D+ + D Y ++ +YD E+ + K V+E L
Sbjct: 272 EESLKVWARFRDLSITKLKDTYDRLNIHYDEYDGESQVSLELMNKMVDELRSL 324
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 23.4 bits (48), Expect = 8.1
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = -1
Query: 273 DNRFCTISRILQQLSYWCSXRCW 205
D + T++++ + LS W R W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 23.4 bits (48), Expect = 8.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 159 VDDEYYKIGKDYDVEANIDXYTNKKAVEEFLKLY-RIGY 272
VD E+Y+I K+ E D + E LK+Y R+ Y
Sbjct: 609 VDREWYEIHKEAKSEIEKDSSKPTEDQESKLKVYGRVAY 647
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,196,984
Number of Sequences: 5004
Number of extensions: 21115
Number of successful extensions: 81
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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