Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O11
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    31   0.057
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   0.70 
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   0.93 
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    26   1.2  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    25   2.1  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   2.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   2.8  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    25   2.8  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   3.7  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    25   3.7  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    24   4.9  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    24   4.9  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    24   6.5  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    24   6.5  
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    23   8.6  
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2...    23   8.6  

>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 30.7 bits (66), Expect = 0.057
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
 Frame = -1

Query: 229 FSFPPMRSFA------KATRFSMLNSDFMTYLFPSTSRPATTGLSP 110
           +SF P  S A      +ATR S+ +S F +YL P+ SR  ++G +P
Sbjct: 152 YSFKPKASIALNTTKSEATRSSLSSSSFDSYLRPNVSRSRSSGNAP 197


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 175 NSDFM-TYLFPSTSRPATTGLSPLEKSIPNS 86
           N+DF+  YL  S   P +T   P+  SIP+S
Sbjct: 209 NADFVKAYLNESAGTPTSTSAPPIPPSIPSS 239


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 169  DFMTYLFPSTSRPATTGLSPLEKSIPNSFNSWTKSSLS 56
            DF+   F S      + +SPL+ +IPNS ++ T   L+
Sbjct: 1515 DFLIDCFMSLYNEVKSSISPLDANIPNSPSTITAKPLN 1552


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = -3

Query: 221 PTDEVFRESDQVFDAEFRLHDVFVPVDVTSGH 126
           P ++VF +S+ VFD    + ++  P++ ++G+
Sbjct: 539 PNEDVFPDSNPVFDEFTNISNLTSPIEASNGN 570


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = -1

Query: 280 KHSPFSSHL*QYTCSNGFSFPPMRSFAKATRFSMLNSDFMTYLFPSTSRPATTGLSPLEK 101
           K   F SHL   TCS  F F       + +     ++D  TY   S S   ++  + L K
Sbjct: 121 KQLNFESHLDDQTCSKRFYFNEQSGSDRYSLKCDSDTDSSTYFGDSASETCSSASNSLYK 180


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 175 NSDFMTYLFPSTSRPATTGLSPLEKSIPNSFN 80
           +SD  T LFP+ S PA+T    L  +I  S N
Sbjct: 134 SSDNETPLFPNNSPPASTTALNLSSNIVPSIN 165


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 60   KDDFVHELNEFGIDFSKGDKPVVAGRDVDGNKYVMKSEFSIENLV 194
            +DD V+E  EF  D S     VV+  D D   Y    + +IE +V
Sbjct: 1861 EDDGVYEEMEFEDDQSGSADSVVSEDDADDVMYSDNDDMNIEFMV 1905


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -1

Query: 205 FAKATRFSMLNSDFMTYLFPSTSRPATTGLSPLEKSIPNSFNSWTKSSLSLMAKFTLDIS 26
           F+ A  F  L    M     ST  P       ++K   N+  SW ++ LS ++   L IS
Sbjct: 45  FSLAVNFIFL---LMRIYIKSTHVPVQRNQLFVDKQSINTSRSWFRAFLSFLSICFLFIS 101

Query: 25  FAT--LSTRF 2
           F     STRF
Sbjct: 102 FLNFIFSTRF 111


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 214 MRSFAKATRFSMLNSDFMTYLFPSTSRPATTGLSPLEKSIPNSFNSWTKS 65
           M SF ++ +   + S     + PST+    T  S  EKS+  SF  + +S
Sbjct: 1   MTSFTESKKLDEIESPVPEIIVPSTTNGNGTIESYKEKSVGTSFLDFFRS 50


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 140 VTSGHDGFVAFREIDTELVQLVDEIILVAYGEVHVGHFLRDLEYS 6
           V SG    +   E   E ++    ++ +A  EVH     R++EY+
Sbjct: 142 VDSGDIRCIGLCEPSVEEIKRAHSVVRIAAIEVHYSMLFREIEYN 186


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -1

Query: 229 FSFPPMRSFAKATRFSMLNSDFMTYLFPSTSRPATTGLSPLEKSIPNSFNSWTK 68
           FS P  R+  +  R       ++   +PS+ RP  T   P +    NS++ + K
Sbjct: 446 FSTPEERALGQIVREKYHTDFYVIDKYPSSVRPFYTMPDPEDPRYSNSYDFFMK 499


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -1

Query: 229 FSFPPMRSFAKATRFSMLNSDFMTYLFPSTSRPATTGLSPLEKSIPNSFNSW 74
           F  P +++   + +  + N D+++   P TS PA++ L P    +  SFN +
Sbjct: 177 FDIPEIKTETCSNKDHLENFDYLSSSIPETSGPASSVL-PSSSQL-ESFNEF 226


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 97  IPNSFNSWTKSSLSLMAKFTLDISF 23
           +P   + WT + +SLM K ++ + F
Sbjct: 412 VPGPNDPWTTNGISLMPKHSIPLHF 436


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -1

Query: 181  MLNSDFMTYLFPSTSRPATTGLSPLEKSIPNSFNSWTKSSLSLMAKFTLDISFATLSTR 5
            + N+D    +   + R ++  L  + K+IP+   + T+  LS M     DI    L  R
Sbjct: 946  VFNTDSNDLVRECSIRASSVSLGSIAKTIPSVLTAQTRILLSYMLLPECDIDVQLLKKR 1004


>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 418

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +3

Query: 12  LKVAKEMSNVNFAISDKDDFVHELNEFGIDFSKGDKPVVA 131
           L+  ++ +N  F    K      L+ FG+D+ +   PV +
Sbjct: 42  LREGEQFANAFFDTEKKIQIAKALDNFGVDYIELTSPVAS 81


>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
           Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 214 MRSFAKATRFSMLNSDFMTYLFPSTSRPATTGLSPLE 104
           M S+A+ TRF ++ +     + P +SR +     PL+
Sbjct: 147 MESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLD 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,131,715
Number of Sequences: 5004
Number of extensions: 19918
Number of successful extensions: 74
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)