Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_O11
(325 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-06
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 45 2e-05
SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55) 27 3.5
SB_14838| Best HMM Match : T4_deiodinase (HMM E-Value=0) 27 4.6
SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23) 26 6.1
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 26 6.1
SB_57417| Best HMM Match : Death (HMM E-Value=1.8) 26 6.1
SB_43831| Best HMM Match : 7tm_1 (HMM E-Value=0.0025) 26 6.1
SB_19059| Best HMM Match : Arm (HMM E-Value=0.044) 26 6.1
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0) 26 6.1
SB_16167| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 48.0 bits (109), Expect = 2e-06
Identities = 27/80 (33%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 NRVLKVAKEMSNVNFAISDKDDFVHELNEFGIDFSKGDKPVVAGRDVDGNKYVM---KSE 173
++V++VAK+ ++ FAI+++++ EL +FG+ S G++ V D +G K+ M + E
Sbjct: 434 SKVIEVAKDHRDITFAIANEEESEQELKDFGLAES-GEEVNVGCFDKEGRKFRMDPDEEE 492
Query: 174 FSIENLVAFAKDLIGGKLKP 233
FS ++L F ++ G LKP
Sbjct: 493 FSEDSLREFVEEFKAGNLKP 512
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 44.8 bits (101), Expect = 2e-05
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +3
Query: 24 KEMSNVNFAISDKDDFVHELNEFGIDFSKGDKPVVAGRDVDGNKYVMKSEFSIENLVAFA 203
K NFAI+ D+ L++ G+ K + V D G+K++MK +FS+++ F
Sbjct: 782 KNAKGHNFAIASFSDYERVLSDIGVT-DKANPSAVVYNDA-GDKFLMKEKFSVDSFKQFL 839
Query: 204 KDLIGGKLKP 233
+D G LKP
Sbjct: 840 EDYFAGSLKP 849
>SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55)
Length = 1087
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +2
Query: 221 ETKTIRTSILSQMRTEGRMFKIINIQFL 304
E+K +R + ++++ +FK+IN +FL
Sbjct: 709 ESKRLRKHVREDLKSDSEVFKLINTKFL 736
>SB_14838| Best HMM Match : T4_deiodinase (HMM E-Value=0)
Length = 194
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 96 IDFSKGDKPVVAGRDVDGNKYVMKSEFSIENLVAFAKDL 212
+DF+KGD+P+V MK E ++ KD+
Sbjct: 50 LDFAKGDRPLVVNFGSSTCPIFMKKMLEYEKMIVQFKDV 88
>SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)
Length = 432
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 182 RKPGRFRERPHRWETKTIRTSIL 250
R PGR R R HR+E +R ++L
Sbjct: 374 RFPGRLRLRDHRFERFAVRHAVL 396
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 160 TYLFPSTSRPATTGLSPLEKSIPNSFNSWTKSSLSLMAKFTLDISFA 20
T +FPSTS P T L P + + + + S ++ M +S A
Sbjct: 8 TMIFPSTSVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLA 54
>SB_57417| Best HMM Match : Death (HMM E-Value=1.8)
Length = 182
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 182 RKPGRFRERPHRWETKTIRTSIL 250
R PGR R R HR+E +R ++L
Sbjct: 124 RFPGRLRLRDHRFERFAVRHAVL 146
>SB_43831| Best HMM Match : 7tm_1 (HMM E-Value=0.0025)
Length = 276
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 182 RKPGRFRERPHRWETKTIRTSIL 250
R PGR R R HR+E +R ++L
Sbjct: 53 RFPGRLRLRDHRFERFAVRHAVL 75
>SB_19059| Best HMM Match : Arm (HMM E-Value=0.044)
Length = 603
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 182 RKPGRFRERPHRWETKTIRTSILSQMRTEGRMFK 283
RKPGR ERP + T I+++ R+ R K
Sbjct: 9 RKPGRGSERPFYVASGTTSADIIAEARSAVRSLK 42
>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1432
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 185 KPGRFRERPHRWETKTIRTSILSQMRTEGRMFKII 289
KPGR +++PH E K + +MR R K++
Sbjct: 1098 KPGRKKKQPHTEEYKEEKEKCKEKMRPVKRALKML 1132
>SB_16167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 25.8 bits (54), Expect = 8.1
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +3
Query: 27 EMSNVNFAISDKDDFVHELNEFGIDFSKGDKPVVAGRDVDGNKYVMKSEFSIE---NLVA 197
E +NF I+D F H L+ G S+ D P++A D + Y+ I L
Sbjct: 344 EKGQMNFLIADGHKFSHPLHHLG--KSQQDLPLIA-IDSFRHMYLFPKFEDIRIPGRLKQ 400
Query: 198 FAKDLIGGKL 227
F DL GKL
Sbjct: 401 FTDDLHSGKL 410
>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 9 VLKVAKEMSNVNFAISDKDDFVHELNEFGIDFSKGDKPVVAGRDVD 146
V K+ E+ N + I+DKD + E G++ KG+ + + D
Sbjct: 13 VSKICTELDN-HLGINDKDLEEKSIEETGVEVGKGNLKEITDPETD 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,229,421
Number of Sequences: 59808
Number of extensions: 140101
Number of successful extensions: 1150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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