Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O11
         (325 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60640.2 68418.m07611 thioredoxin family protein similar to p...    31   0.13 
At5g60640.1 68418.m07610 thioredoxin family protein similar to p...    31   0.13 
At3g30843.1 68416.m03970 hypothetical protein                          28   1.6  
At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative...    27   3.8  
At1g07280.1 68414.m00774 expressed protein                             27   3.8  
At2g46430.1 68415.m05778 cyclic nucleotide-regulated ion channel...    26   5.0  
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta...    26   6.7  
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta...    26   6.7  
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ...    25   8.8  
At4g34270.1 68417.m04872 TIP41-like family protein contains Pfam...    25   8.8  
At1g66070.1 68414.m07499 translation initiation factor-related s...    25   8.8  

>At5g60640.2 68418.m07611 thioredoxin family protein similar to
           protein disulfide isomerase GI:5902592 from [Volvox
           carteri f. nagariensis], GI:2708314 from Chlamydomonas
           reinhardtii; contains Pfam profile: PF00085 Thioredoxin
          Length = 536

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 57  DKDDFVHELNE-FGIDFSKGDKPVVAGRDVDGNKYVMKSEFSIENLVAFAKDLIGGKLKP 233
           D +D+   + E FG+    G K +    + D  KY    E   + +  F +D +  KLKP
Sbjct: 370 DNEDYGKPVAEYFGVS-GNGPKLIGYTGNEDPKKYFFDGEIQSDKIKIFGEDFLNDKLKP 428

Query: 234 F 236
           F
Sbjct: 429 F 429


>At5g60640.1 68418.m07610 thioredoxin family protein similar to
           protein disulfide isomerase GI:5902592 from [Volvox
           carteri f. nagariensis], GI:2708314 from Chlamydomonas
           reinhardtii; contains Pfam profile: PF00085 Thioredoxin
          Length = 597

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 57  DKDDFVHELNE-FGIDFSKGDKPVVAGRDVDGNKYVMKSEFSIENLVAFAKDLIGGKLKP 233
           D +D+   + E FG+    G K +    + D  KY    E   + +  F +D +  KLKP
Sbjct: 370 DNEDYGKPVAEYFGVS-GNGPKLIGYTGNEDPKKYFFDGEIQSDKIKIFGEDFLNDKLKP 428

Query: 234 F 236
           F
Sbjct: 429 F 429


>At3g30843.1 68416.m03970 hypothetical protein
          Length = 310

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 204 KDLIGGKLKPFEQVYCHRCELKGECL 281
           K+ +G   K   +  CHRC +KG CL
Sbjct: 248 KNNVGRVKKRHVESTCHRCGMKGHCL 273


>At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative
           similar to glucose-6-phosphate isomerase [Spinacia
           oleracea] GI:3413511; contains Pfam profile PF00342:
           glucose-6-phosphate isomerase
          Length = 613

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +3

Query: 171 EFSIENLVAFAKDLIGGKLKP 233
           E +++++ AF+ D+I GK+KP
Sbjct: 156 ENTLDSICAFSDDIISGKIKP 176


>At1g07280.1 68414.m00774 expressed protein
          Length = 552

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 120 PVVAGRDVDGNKYVMKSEFSIENLVAFAKD 209
           PV +G D DG+    KS+FS  +L A + D
Sbjct: 352 PVQSGTDGDGSDQFRKSQFSSSSLGATSAD 381


>At2g46430.1 68415.m05778 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC3) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           GI:4581201 from [Arabidopsis thaliana]
          Length = 706

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 176 QHRKPGRFRERPHRWETKTIRTSILSQMRTEGRMFK 283
           Q  K  RF      + TKT R S+ S M+T  R F+
Sbjct: 5   QRNKFVRFNGNDDEFSTKTTRPSVSSVMKTVRRSFE 40


>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 203 RESDQVFDAEFRLHDVFVPVDVTSGHDGFVAF 108
           +E    +D    LH V+  V V+S ++GF  F
Sbjct: 120 KEKRAAYDRRKSLHSVYQKVSVSSSNNGFCNF 151


>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 203 RESDQVFDAEFRLHDVFVPVDVTSGHDGFVAF 108
           +E    +D    LH V+  V V+S ++GF  F
Sbjct: 120 KEKRAAYDRRKSLHSVYQKVSVSSSNNGFCNF 151


>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 541

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 177 SIENLVAFAKDLIGGKLKPFEQVYCHRCEL 266
           +I NL   A D   G+ KP    +C +C+L
Sbjct: 14  TISNLYNHACDFCPGRPKPGTIFFCEKCDL 43


>At4g34270.1 68417.m04872 TIP41-like family protein contains Pfam
           PF04176: TIP41-like family; identical to cDNA putative
           cytoskeletal protein mRNA, partial cds GI:5031529
          Length = 290

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 191 GRFRERPHRWETKTIRTSILSQMRTE 268
           GR   R H WE +T+R +IL+ +  E
Sbjct: 21  GRRGLRIHDWEIETLRGTILTSLAVE 46


>At1g66070.1 68414.m07499 translation initiation factor-related
           similar to Eukaryotic translation initiation factor 3
           subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
           (Swiss-Prot:O75822) [Homo sapiens]
          Length = 226

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/63 (23%), Positives = 27/63 (42%)
 Frame = +3

Query: 9   VLKVAKEMSNVNFAISDKDDFVHELNEFGIDFSKGDKPVVAGRDVDGNKYVMKSEFSIEN 188
           +LK    +S  N   +D  D    +     +  K +K   AG+   G K  +  + + ++
Sbjct: 152 LLKTIMRLSLTNMKAADVKDVASSITTIANEKLKAEKEAAAGKKKGGKKKQLIVDKANDD 211

Query: 189 LVA 197
           LVA
Sbjct: 212 LVA 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,792,839
Number of Sequences: 28952
Number of extensions: 99401
Number of successful extensions: 369
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)