BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_O10 (580 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.0 SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 25 6.1 SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 25 6.1 SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 25 8.0 >SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 841 Score = 27.1 bits (57), Expect = 2.0 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 5/98 (5%) Frame = -1 Query: 280 LLHLQNRKVEESRARLAAVTL*RVLGRPSSEATQFCFPSTAALTVVRGVRKHRTDWTF*S 101 L H+ VEE A+ T ++L S+ T++ T++ + T + Sbjct: 236 LQHIYESVVEEKSEAFASATSSKILSEMSASMASSSAHYTSSPTILSRTKSVETPVPMEA 295 Query: 100 D*E-----HSMQ*NFLFNSQNLCFRSALPLFKRRVDYL 2 E +S+ + FNSQN CF +A+ + + L Sbjct: 296 AEEEPATEYSIPSSVTFNSQNDCFSNAMNYLEHEYETL 333 >SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces pombe|chr 2|||Manual Length = 1142 Score = 25.4 bits (53), Expect = 6.1 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = +1 Query: 208 KRARESPPLTGLVTPQPSDSE 270 +++ SPPL G V P P+ +E Sbjct: 115 QQSLNSPPLAGFVKPDPTSAE 135 >SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit Cct3|Schizosaccharomyces pombe|chr 2|||Manual Length = 528 Score = 25.4 bits (53), Expect = 6.1 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -2 Query: 120 QIGHSDQIENIQCNKTFFLIHKTC 49 Q+GH Q+ NIQ K + +TC Sbjct: 15 QVGHKAQMSNIQAAKAVADVIRTC 38 >SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 306 Score = 25.0 bits (52), Expect = 8.0 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = +2 Query: 104 SECPICSMFADPS 142 SECP+C F+ PS Sbjct: 288 SECPLCRAFSSPS 300 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,761,221 Number of Sequences: 5004 Number of extensions: 27211 Number of successful extensions: 80 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 80 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 248115846 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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