Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O10
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.0  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   6.1  
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    25   6.1  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    25   8.0  

>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
 Frame = -1

Query: 280 LLHLQNRKVEESRARLAAVTL*RVLGRPSSEATQFCFPSTAALTVVRGVRKHRTDWTF*S 101
           L H+    VEE     A+ T  ++L   S+         T++ T++   +   T     +
Sbjct: 236 LQHIYESVVEEKSEAFASATSSKILSEMSASMASSSAHYTSSPTILSRTKSVETPVPMEA 295

Query: 100 D*E-----HSMQ*NFLFNSQNLCFRSALPLFKRRVDYL 2
             E     +S+  +  FNSQN CF +A+   +   + L
Sbjct: 296 AEEEPATEYSIPSSVTFNSQNDCFSNAMNYLEHEYETL 333


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 208 KRARESPPLTGLVTPQPSDSE 270
           +++  SPPL G V P P+ +E
Sbjct: 115 QQSLNSPPLAGFVKPDPTSAE 135


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 120 QIGHSDQIENIQCNKTFFLIHKTC 49
           Q+GH  Q+ NIQ  K    + +TC
Sbjct: 15  QVGHKAQMSNIQAAKAVADVIRTC 38


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 104 SECPICSMFADPS 142
           SECP+C  F+ PS
Sbjct: 288 SECPLCRAFSSPS 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,221
Number of Sequences: 5004
Number of extensions: 27211
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)