Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O09
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    25   7.1  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   7.1  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    25   7.1  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    25   7.1  
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    24   9.4  

>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 450 ANSTPRPPEEQLIP 409
           A STP P +EQLIP
Sbjct: 330 AKSTPLPEQEQLIP 343


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 85  DEIYDLNGLLGTTYAVYFWPPNQRQREDCEVINFKK 192
           DE   LN +L  +   YF   +++ R  C +++FK+
Sbjct: 618 DENQSLNNILVASLKFYFNLLHRKVRNGCALLHFKE 653


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 43  IRNNEELCLDYYKNDEIYDLNGLLGTTYAVYFWPPNQRQREDCEVINFK 189
           +    E  +D   +DE Y LN     T A + +P NQR     +  + K
Sbjct: 119 VNEEYENSIDEESDDEGYSLNEDTTATNASFRYPMNQRSTRKSQFYSSK 167


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 124 YAVYFWPPNQRQREDC-EVIN-FKKLNSQEVYQAGNNCYRLNLSSEQSIV 267
           YA  F P  +   E C E++  +K+L   +   AG N YR+ +   +S++
Sbjct: 658 YARTFKP--KLNTESCAEIVKKYKQLRMDDAQGAGKNSYRITVRQLESMI 705


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 228 LLSSKFVIRAIDCYGYIPGIVLGKLSIYF 314
           L S +   +A+D  G+  G++L  +S+YF
Sbjct: 439 LTSVQTAAQAVDTIGWKMGVMLLNISVYF 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,869,499
Number of Sequences: 5004
Number of extensions: 37760
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)