Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O09
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0695 + 5251802-5253016                                           27   7.0  
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272...    27   7.0  
03_05_0135 + 21154421-21154703,21154985-21155103,21155228-211554...    27   9.2  

>07_01_0695 + 5251802-5253016
          Length = 404

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = +1

Query: 97  DLNGLLGTTYAVYFWPPNQRQREDCEVINFKKLNSQEVYQAGNNCYRLNLSSEQSIV 267
           DLNG L   +AVY  P +     D E   + K  S +     NN Y L L  ++ IV
Sbjct: 302 DLNGSLVMVHAVYGSPMDLWFLSDLEQGLWVKKYSIDFEYYNNNAYPLLLLDDEKIV 358


>01_06_1795 -
           39925019-39926029,39926265-39926408,39927200-39927277,
           39927722-39927838,39927925-39927981,39928492-39928623,
           39928725-39928922,39929364-39929474,39929570-39929785,
           39929879-39930064,39930590-39931192
          Length = 950

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -1

Query: 450 ANSTPRPPEEQLIPS 406
           AN+TP+P +EQ+IPS
Sbjct: 819 ANATPQPAKEQVIPS 833


>03_05_0135 +
           21154421-21154703,21154985-21155103,21155228-21155458,
           21155779-21156028,21157496-21157716
          Length = 367

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 374 YLFITINENYVLGINCSSGGRGV 442
           YL I+    Y+ G+N SSGG GV
Sbjct: 106 YLSISNTSVYLRGVNFSSGGSGV 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,404,878
Number of Sequences: 37544
Number of extensions: 216947
Number of successful extensions: 429
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)