Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O09
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000265-6|AAB52944.1|  150|Caenorhabditis elegans Hypothetical ...    27   4.8  
Z75711-6|CAB00037.3|  387|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AF000191-1|AAB52884.1|  533|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AF000265-6|AAB52944.1|  150|Caenorhabditis elegans Hypothetical
           protein C18E3.4 protein.
          Length = 150

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 287 STGKIVNLLYYGKGEVKSLYRSCDRIISKYLFITINENYVLGINCSS 427
           +T  +  L YYG   V S Y S   I +   F+ I++  +L INC +
Sbjct: 21  TTTTLDELYYYGAECVLSCYVSVVSICNTQQFVVIDKIALLYINCDN 67


>Z75711-6|CAB00037.3|  387|Caenorhabditis elegans Hypothetical
           protein K02B12.8 protein.
          Length = 387

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +1

Query: 19  YLFCNVNCIRNNEELCLDYYKNDEIYDLNGLLGTTYAVYFWPPNQRQREDCEVINFKKLN 198
           ++FC   C + +  +CL   KN  +  L+G + +   +YF  P +   +    I  KK++
Sbjct: 25  HIFCT-KCAKADLAVCLICKKNVRLVRLDGNISSGIKIYFADPIKMVADSLAKIQ-KKID 82

Query: 199 SQE 207
            Q+
Sbjct: 83  FQQ 85


>AF000191-1|AAB52884.1|  533|Caenorhabditis elegans Hypothetical
           protein T23C6.3 protein.
          Length = 533

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +2

Query: 329 EVKSLYRSCDRIISKYLFITINENYVLGI 415
           ++KS+ + C  +++KY  +  N+ + +GI
Sbjct: 122 KIKSMIKDCQEMLTKYTNLDSNDRFNIGI 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,268,293
Number of Sequences: 27780
Number of extensions: 210180
Number of successful extensions: 516
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)