Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O08
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    27   0.96 
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    27   1.3  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    27   1.7  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   2.2  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   2.9  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   2.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   2.9  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    25   5.1  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   6.7  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 195 AAPKIEYNRLLLHDDQSASLYPPSPP 272
           AA K+E N L L  D     +PP+PP
Sbjct: 209 AAEKVEDNTLTLFSDVERYSHPPTPP 234


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 265 DGGYRLADWSSCSNNLLYSIFGAALGNVLSRFC 167
           DG  R+AD+  C  N+L       LGN  S FC
Sbjct: 800 DGHIRIADYGLCKENML-------LGNTTSTFC 825


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +1

Query: 148 NFNYHFYKICLKRSRALH-----RRSNTIDYCCTTTSQLACTHHHRPRSSRTVLISLTIF 312
           +F+   ++ C K+S  LH      ++N +    +T S    T  H P +S   LIS T  
Sbjct: 47  HFSTTSWRACRKKSAPLHCPSTNGKTNVLPSYASTPSLSPMTSSHFPYASDGTLISATNH 106

Query: 313 C 315
           C
Sbjct: 107 C 107


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 330 TCKQENIFSNWLEEKVELPIFDNIPE 407
           +CK+ + FSN   E  E+  FD+ P+
Sbjct: 487 SCKESSEFSNQTTENSEMEFFDDRPD 512


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 160 HFYKICLKRSRALHRRSNTIDYCCTTTSQ 246
           HF    L  + +  RR   ++YCC  TS+
Sbjct: 589 HFQTAVLYTTPSGERRVRVVNYCCAVTSK 617


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 36  CANYIKLYKNLKVSYDYLENL*KMCCYKNN 125
           C NY+  Y  L   ++YL+   K   YKNN
Sbjct: 512 CTNYVGRYTFLNELFEYLQE--KTTYYKNN 539


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +3

Query: 42   NYIKLYKNLKVSYDYLENL*KMCCYKNNGM----CDLCREFQLSLLQNLLKTFPSAAPKI 209
            N +K++K        +E+  K+  Y+N  M    CD   EF  SLL+++   +       
Sbjct: 1169 NSLKIFKKAGCYKLNVEH--KIITYQNYEMTFNDCDAFSEFNFSLLKDITSKWKDLLESF 1226

Query: 210  EYNRLLLHDDQSASL 254
            E  RL L +++   L
Sbjct: 1227 ECRRLKLENNKDEIL 1241


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 15  SFFDHAHCANYIKLYKNLKVSYDYLENL 98
           S FD A      KLY N K+  D+L+++
Sbjct: 433 SKFDIAEVERMCKLYSNFKLLMDWLDDI 460


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 330 TCKQENIFSNWLEEKVELPIFDNIPERVEP 419
           T K    F+N L E + L     IP+++EP
Sbjct: 753 TSKPTQRFANELAEDMSLAFHSTIPKKMEP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,721,362
Number of Sequences: 5004
Number of extensions: 34788
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)