Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_O08
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1349 + 25951445-25951774,25953301-25953639 31 0.40
03_06_0335 + 33211705-33211800,33211886-33211982,33212078-332122... 31 0.40
12_01_0147 + 1138382-1138532,1138660-1138967,1139233-1139934 29 1.2
01_06_0712 + 31397167-31397402,31399823-31400252 29 1.2
10_08_0332 - 16843295-16843356,16843884-16846656 29 2.2
10_08_0331 - 16831646-16834756 27 5.0
07_01_0499 - 3738959-3740068 27 5.0
06_02_0194 + 12885340-12885708,12886098-12886367,12886476-128865... 27 8.7
04_01_0070 - 706640-706747,707221-707307,707397-707502,707585-70... 27 8.7
>07_03_1349 + 25951445-25951774,25953301-25953639
Length = 222
Score = 31.1 bits (67), Expect = 0.40
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +3
Query: 159 SLLQNLLKTFPSAAPKIEYNRLLLHDDQSASLYPPSP 269
SLL+ F SAA +RLL++ QSA +YPP P
Sbjct: 57 SLLRYRRACFSSAATTDLDHRLLVYSPQSAPVYPPPP 93
>03_06_0335 +
33211705-33211800,33211886-33211982,33212078-33212204,
33212953-33213138,33213702-33213789,33214028-33214084,
33214171-33214260,33214339-33214461,33215024-33215098,
33215169-33215228,33215464-33215580,33215854-33216093,
33216181-33216246,33216370-33216459,33216914-33217003,
33217309-33217398,33217702-33217770,33217841-33217921,
33218108-33218215,33218336-33218439,33218822-33218935,
33219018-33219231
Length = 793
Score = 31.1 bits (67), Expect = 0.40
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 147 EFQLSLLQNLLKTFPSAAPKIEYNRLLLHDDQSASLYPPSPPEIKP 284
E+ L L+ LL FP P ++ +L S Y + PE+ P
Sbjct: 271 EYHLQTLETLLSAFPQLQPNVDIKTVLSQLMDRLSSYAAASPEVLP 316
>12_01_0147 + 1138382-1138532,1138660-1138967,1139233-1139934
Length = 386
Score = 29.5 bits (63), Expect = 1.2
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = +3
Query: 228 LHDDQSASLYPPSPPEIKPNRAXXXXXXXXXXXXTCKQENIFSN 359
+HD+ S+S PP+PP++ ++ +C ++ +N
Sbjct: 191 IHDNNSSSQQPPAPPDMNNQQSDFQPMTAMSMSKSCSLTDLLNN 234
>01_06_0712 + 31397167-31397402,31399823-31400252
Length = 221
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 280 LISGGDGGYRLAD-WSSCSNNLLYSIFGAALGNVLSRFCKSD 158
+ +GG GGYR D + +L G N+LSRF K++
Sbjct: 1 MAAGGGGGYRAEDDYDYLFKTVLIGDSGVGKSNLLSRFTKNE 42
>10_08_0332 - 16843295-16843356,16843884-16846656
Length = 944
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 247 ADWSSCSNNLLYSIFGAAL-GNVLSRFCK 164
+DW C+N SI G ++ GN+ S FCK
Sbjct: 622 SDWGQCTNLTYLSINGNSISGNLDSTFCK 650
>10_08_0331 - 16831646-16834756
Length = 1036
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -1
Query: 277 ISGGDGGYRLA-DWSSCSNNLLYSIFGAAL-GNVLSRFC 167
ISG RL+ DW C+N SI G ++ GN+ S FC
Sbjct: 612 ISGSKLTGRLSSDWGQCTNLTYLSINGNSISGNLDSTFC 650
>07_01_0499 - 3738959-3740068
Length = 369
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 280 LISGGDGGYRLADWSSCSNNLLYSIFGAALGNV--LSRFCKSDN*NSLHR 137
L GG GGYRL ++ ++ ++ G L +V ++R C D L R
Sbjct: 259 LYGGGGGGYRLPGDAATFEFVVRAVIGRTLYDVGKMARHCPGDMRGGLER 308
>06_02_0194 +
12885340-12885708,12886098-12886367,12886476-12886592,
12888044-12888094,12889599-12889719,12890146-12890311,
12890598-12890691
Length = 395
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +1
Query: 220 DYCCTTTSQLACTHHHRPRSSRTVLISLTIFCSS*TTPANKRIF 351
D CC T +L+ +H H+ S + ++ + TI ++ +P++ ++F
Sbjct: 290 DACCRTHWELSASHTHK-HSGKPIVFAGTIAAAT-LSPSSLKVF 331
>04_01_0070 -
706640-706747,707221-707307,707397-707502,707585-707693,
707766-708145,708508-708601,709351-709475,709633-709674,
710822-710892,710979-711060,711157-711277,712404-712713
Length = 544
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 417 APHAPEYYQKLVVPPFPPANWRKYSLVCRCC 325
A AP + L PPFPP N R + R C
Sbjct: 32 AASAPPFLLDLASPPFPPKNPRPDFPLFRSC 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,194,059
Number of Sequences: 37544
Number of extensions: 239439
Number of successful extensions: 729
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -