Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O08
         (439 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY028898-1|AAK30023.1| 1617|Homo sapiens ATP-binding cassette A6...    29   7.0  
AK097296-1|BAC04994.1|  815|Homo sapiens protein ( Homo sapiens ...    29   7.0  
AF373328-1|AAM77558.1| 1617|Homo sapiens ABC transporter ABCA6 p...    29   7.0  
AF373290-1|AAM77557.1| 1617|Homo sapiens ABC transporter ABCA6 p...    29   7.0  

>AY028898-1|AAK30023.1| 1617|Homo sapiens ATP-binding cassette A6
            protein.
          Length = 1617

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +3

Query: 153  QLSLLQN-LLKTFPSAAPKIEYNRLLLHDDQSASLYPPSPPEIKPNRAXXXXXXXXXXXX 329
            Q++L+   +LK FP AA +  Y+ LL +    A +YP S    K                
Sbjct: 1519 QVTLVHTEILKLFPQAAGQERYSSLLTYKLPVADVYPLSQTFHKLEAVKHNFNLEEYSLS 1578

Query: 330  TCKQENIFSNWLEEKVELPIFD 395
             C  E +F   L ++ E+  FD
Sbjct: 1579 QCTLEKVFLE-LSKEQEVGNFD 1599


>AK097296-1|BAC04994.1|  815|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39977 fis, clone SPLEN2029295, moderately
           similar to ATP-binding cassette, sub-family A member 8.
           ).
          Length = 815

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +3

Query: 153 QLSLLQN-LLKTFPSAAPKIEYNRLLLHDDQSASLYPPSPPEIKPNRAXXXXXXXXXXXX 329
           Q++L+   +LK FP AA +  Y+ LL +    A +YP S    K                
Sbjct: 717 QVTLVHTEILKLFPQAAGQERYSSLLTYKLPVADVYPLSQTFHKLEAVKHNFNLEEYSLS 776

Query: 330 TCKQENIFSNWLEEKVELPIFD 395
            C  E +F   L ++ E+  FD
Sbjct: 777 QCTLEKVFLE-LSKEQEVGNFD 797


>AF373328-1|AAM77558.1| 1617|Homo sapiens ABC transporter ABCA6
            protein.
          Length = 1617

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +3

Query: 153  QLSLLQN-LLKTFPSAAPKIEYNRLLLHDDQSASLYPPSPPEIKPNRAXXXXXXXXXXXX 329
            Q++L+   +LK FP AA +  Y+ LL +    A +YP S    K                
Sbjct: 1519 QVTLVHTEILKLFPQAAGQERYSSLLTYKLPVADVYPLSQTFHKLEAVKHNFNLEEYSLS 1578

Query: 330  TCKQENIFSNWLEEKVELPIFD 395
             C  E +F   L ++ E+  FD
Sbjct: 1579 QCTLEKVFLE-LSKEQEVGNFD 1599


>AF373290-1|AAM77557.1| 1617|Homo sapiens ABC transporter ABCA6
            protein.
          Length = 1617

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +3

Query: 153  QLSLLQN-LLKTFPSAAPKIEYNRLLLHDDQSASLYPPSPPEIKPNRAXXXXXXXXXXXX 329
            Q++L+   +LK FP AA +  Y+ LL +    A +YP S    K                
Sbjct: 1519 QVTLVHTEILKLFPQAAGQERYSSLLTYKLPVADVYPLSQTFHKLEAVKHNFNLEEYSLS 1578

Query: 330  TCKQENIFSNWLEEKVELPIFD 395
             C  E +F   L ++ E+  FD
Sbjct: 1579 QCTLEKVFLE-LSKEQEVGNFD 1599


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,561,182
Number of Sequences: 237096
Number of extensions: 1239873
Number of successful extensions: 3261
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3255
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)