Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O08
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcript...    28   2.6  
Z81477-7|CAB03927.2|  326|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AL022288-7|CAA18369.1|  326|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z72515-1|CAA96681.1|  419|Caenorhabditis elegans Hypothetical pr...    27   4.5  

>U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcription
           factor) homologprotein 1 protein.
          Length = 759

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 148 NFNYHFYKICLKRSRALHR-RSNTIDYCCTTTSQLACTHH 264
           N  ++FYK+C+ R+    R RS+ +  C   T +L  T H
Sbjct: 103 NTAFNFYKMCVSRNLTRGRNRSSVVAVCMYITCRLENTAH 142


>Z81477-7|CAB03927.2|  326|Caenorhabditis elegans Hypothetical
           protein C27C7.4 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = +1

Query: 118 KITECVIC--VENFNYHFYKICLKRSRALHRRSNTIDYCCTTTSQLACTH 261
           +I  C +C   E    +F         A  RRS+ I Y CT T+    +H
Sbjct: 11  EIASCQVCHSTERTRLYFGITSCAACAAFFRRSDGIRYMCTATNSCTISH 60


>AL022288-7|CAA18369.1|  326|Caenorhabditis elegans Hypothetical
           protein ZK1025.10 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = +1

Query: 118 KITECVIC--VENFNYHFYKICLKRSRALHRRSNTIDYCCTTTSQLACTH 261
           +I  C +C   E    +F         A  RRS+ I Y CT T+    +H
Sbjct: 11  EIASCQVCHSTERTRLYFGITSCAACAAFFRRSDGIRYMCTATNSCTISH 60


>Z72515-1|CAA96681.1|  419|Caenorhabditis elegans Hypothetical
           protein T11A5.1 protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +1

Query: 100 RKCV-VIKITECVICVENFNYHFYKI-CLKRSRALHRRSNTIDYCCTTTSQLACTHHHRP 273
           R C+ V+   +  +C   + Y    I C+   +  HRR NTID   T T + A  H   P
Sbjct: 304 RSCIPVLSHQDMPLCFVCYLYRLRTISCVAAKKYPHRRPNTID---TYTQRHAYRHFLFP 360

Query: 274 RSSRTVLI 297
           R     +I
Sbjct: 361 RIKNIKII 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,645,334
Number of Sequences: 27780
Number of extensions: 206699
Number of successful extensions: 668
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)