Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O08
         (439 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00...    27   4.2  
At4g27190.1 68417.m03905 disease resistance protein (NBS-LRR cla...    27   5.5  
At1g74650.1 68414.m08645 myb family transcription factor (cY13) ...    27   5.5  
At1g09770.1 68414.m01096 myb family transcription factor contain...    27   5.5  
At5g28910.1 68418.m03564 expressed protein                             26   9.7  
At1g74140.1 68414.m08587 hypothetical protein                          26   9.7  

>At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 389

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +3

Query: 51  KLYKNLKV--SYDYLENL*KMCCYKNNGMCDLCREFQLSLLQNLLKT 185
           K +K L V   YD +E   K+ C   N  CD C+   L   Q   +T
Sbjct: 155 KSWKELTVFLGYDPIEGKHKVVCLPRNRTCDECQVLTLGSAQKSWRT 201


>At4g27190.1 68417.m03905 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 985

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 51  KLYKNLKVSYDYLENL*KMC 110
           K+++ LK+SYD+LE+  K C
Sbjct: 378 KIFQPLKLSYDFLEDKAKFC 397


>At1g74650.1 68414.m08645 myb family transcription factor (cY13)
           similar to myb protein cY13 GI:928930 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00249 myb
           DNA-binding domain; identical to cDNA cY13 gene
           GI:928929
          Length = 330

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 24/106 (22%), Positives = 35/106 (33%)
 Frame = +3

Query: 108 CCYKNNGMCDLCREFQLSLLQNLLKTFPSAAPKIEYNRLLLHDDQSASLYPPSPPEIKPN 287
           C   NNG     R       +  L+T  + A +  +  L L  DQ +SL PP P   KP+
Sbjct: 140 CNNNNNGCNHNKRTTNKGQWEKKLQTDINMAKQALFQALSL--DQPSSLIPPDPDSPKPH 197

Query: 288 RAXXXXXXXXXXXXTCKQENIFSNWLEEKVELPIFDNIPERVEPTP 425
                         T     +  NW       P   ++      +P
Sbjct: 198 H----HSTTTYASSTDNISKLLQNWTSSSSSKPNTSSVSNNRSSSP 239


>At1g09770.1 68414.m01096 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 844

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 162 LLQNLLKTFPSAAPKIEYNRLLLHDDQSASLYPPSPPEI 278
           +LQ  L   P+A+  +  N LL  D   +S+ PP+P E+
Sbjct: 538 VLQRDLPRPPAASLAVIRNSLLSADGDKSSVVPPTPIEV 576


>At5g28910.1 68418.m03564 expressed protein
          Length = 408

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 334 ANKRIFSPIGWRKRWNYQFLIIFRSVWSQHLKWL 435
           A K + S   WRK+       I   VWS H  WL
Sbjct: 233 AAKIVLSAGDWRKKNKKMRTEIEEQVWSDHKPWL 266


>At1g74140.1 68414.m08587 hypothetical protein
          Length = 277

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -1

Query: 283 GLISGGDGGYRLADWSSCSNNLLYSIFGAALGN--VLSRFCKSDN*NSLHRSHIPLFL 116
           G  SGG  G++   W S  N     +FG  + N  V + +  SD    + R+  PL+L
Sbjct: 99  GFESGGFTGFQKRGWKSWINGANGVVFGLVIANAAVFTMWRVSDRSWMIARTLGPLYL 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,935,197
Number of Sequences: 28952
Number of extensions: 182168
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)