Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O07
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.58 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   1.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
 Frame = +2

Query: 344 SESCDCLPGFQLTHFSSEAVPAPV--WAHYLSXRSVKSTPTES 466
           S  C C PG+Q      E    P+  + H     S ++ P  S
Sbjct: 244 SGGCHCKPGYQADVEKQECTECPIGKFKHEAGSHSCEACPAHS 286



 Score = 23.8 bits (49), Expect = 1.0
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -2

Query: 102 CKSESPWYAPVGSMPC 55
           CK +  WY P G   C
Sbjct: 234 CKGDGKWYLPSGGCHC 249


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 311 VDSVLDVVRKESESCDCLPG 370
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 345 PNHVIVYQDSNSHTSPRR 398
           P H    +DS  H +P+R
Sbjct: 391 PYHPSTQEDSEEHLTPKR 408


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 345 PNHVIVYQDSNSHTSPRR 398
           P H    +DS  H +P+R
Sbjct: 391 PYHPSTQEDSEEHLTPKR 408


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 89  DSDLQLERINVYYNEASGGKYV 154
           D+ L+   I  Y N+  GG++V
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFV 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,164
Number of Sequences: 438
Number of extensions: 2412
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)