Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_O05
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654... 49 3e-06
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 31 0.96
11_01_0470 + 3645010-3647686,3647804-3648168 30 1.7
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912... 29 2.2
04_04_0259 - 23993673-23994139,23994505-23994670 29 3.9
05_04_0344 + 20442041-20442374,20443115-20443210,20444512-204446... 28 5.1
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 28 6.8
07_01_0791 - 6165069-6165165,6165288-6165346,6165379-6165432,616... 27 8.9
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741... 27 8.9
>04_04_0672 +
27164628-27164792,27164903-27164965,27165298-27165408,
27165454-27165537,27166081-27166194,27166901-27167494,
27167604-27167675,27167761-27167997
Length = 479
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 373 KNDEASSNLLN-VPENVWSGPTIRPFVALFDNYHKNVIRPEFVTPNEETEQTTYINTILA 549
K D AS L + + ++V PT F AL DNY+ + E VT ++ E+ +I I
Sbjct: 252 KGDMASETLFSWLGDDVLRKPTYSRFCALLDNYNPHQGYKEVVTQQDKHEEVAFIEEIAR 311
Query: 550 TGPIRTLMNFLVSKGLTQMN 609
T PI+ L +LV KG+ +
Sbjct: 312 TAPIKYLHRYLVLKGVASQD 331
>03_01_0016 +
131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 30.7 bits (66), Expect = 0.96
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 313 INNAFNYIQVSLQGKTSPMSKNDEASSNLLNVPENVWSGPTIRPFV 450
+N A+N +Q +Q + P D SN++N + T+R FV
Sbjct: 455 VNTAYNLLQYEVQSRVFPAILKDATKSNVVNYLWQINPSLTLRGFV 500
>11_01_0470 + 3645010-3647686,3647804-3648168
Length = 1013
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 292 EEMFNADINNAFNYIQVSLQGKTSPMSKNDEASSNLL-NVPENVWSGPTIRPFVALFDN 465
EE+F + N + YI SL GK + +S ++++L ++PE ++ PTIR F+N
Sbjct: 442 EELF-LESNQLYGYIPSSL-GKLNVLSVLSMSNNSLHGSIPEEIFRIPTIRKISLSFNN 498
>01_02_0039 -
10490522-10490606,10490674-10490810,10491107-10491248,
10491355-10491419,10491528-10491641,10491846-10492119,
10492215-10492327,10492405-10492499,10492602-10492662,
10492774-10493103
Length = 471
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -2
Query: 241 ACHRSFSF*HNQRRHRQPYRFVAMYSEPYSLAVQSQN*ILNLEGYC*IFDQP 86
AC + + NQ RH Q + Y++ Y + ++ Q + + G+ FD P
Sbjct: 371 ACEMAVVWIQNQLRHNQTRELILQYADQYVVKLEQQGQTVCISGFM-AFDVP 421
>04_04_0259 - 23993673-23994139,23994505-23994670
Length = 210
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 31 ILILLVSLGLCHADDIAQAAGQIFNSILPNLI 126
+L+LLV LG CH A AAG +++ L+
Sbjct: 15 LLLLLVVLGACHVTPAAAAAGARLSALAKALV 46
>05_04_0344 +
20442041-20442374,20443115-20443210,20444512-20444633,
20444781-20445029,20445300-20445549,20446036-20446262
Length = 425
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 64 HADDIAQAAGQIFNSILPNLISNSVTGQQGNTAQNTLQQIGTVVGG 201
H + A AA I ++ N + S QQ + TLQQI +GG
Sbjct: 165 HGVNYASAAAGILDNTGQNFVGRSPFNQQIKNFEATLQQISGKLGG 210
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 256 DSTTDDDLLRISEEMFNADINNAFNYIQ 339
D T D L +S EM+ D NN +Y+Q
Sbjct: 673 DMLTIRDALEVSAEMYKKDPNNVQDYVQ 700
>07_01_0791 -
6165069-6165165,6165288-6165346,6165379-6165432,
6165475-6165516
Length = 83
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 227 ATMTCYVKYRILRRTTTCYGLARRCSMRI 313
AT+T Y ++ LR+T + A RCSM +
Sbjct: 49 ATVTNYGEFNSLRKTVVGWQAASRCSMAV 77
>05_07_0274 -
28873531-28873644,28873727-28873981,28874111-28874179,
28874277-28874415,28874511-28875076,28875225-28875326,
28875425-28875491,28875576-28876072,28876148-28876212,
28876470-28876567,28876652-28876694,28876870-28876963,
28877325-28877360,28877454-28877542,28877667-28877788,
28878193-28878404
Length = 855
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +1
Query: 334 IQVSLQGKTSPMSKNDEASSNLLNVPENVWSGPTIRPFVALFDNYHKNVIRPEFVTPNE 510
++ L+G T P E S+ VP GP P + DN + IRPE + +E
Sbjct: 440 LEDDLKGATGPKKSETEKSAT---VPLKDGDGPLPPPKPEIPDNEFEKRIRPEVIPASE 495
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,045,310
Number of Sequences: 37544
Number of extensions: 280626
Number of successful extensions: 759
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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