Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O04
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    30   0.15 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    28   0.81 
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    27   1.1  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   1.4  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   1.4  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    27   1.9  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    26   3.3  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   4.3  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    25   4.3  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   4.3  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   5.7  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    25   5.7  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   5.7  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   7.5  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    25   7.5  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   7.5  
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom...    24   9.9  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    24   9.9  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    24   9.9  
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc...    24   9.9  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    24   9.9  

>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 30.3 bits (65), Expect = 0.15
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +2

Query: 152 DIGVENTEENRRKYRQLLFSSDPALSENISGVILFHETLYQKTDDGTPLVSLLEKRGIIP 331
           D G+E +E NRRK    +FS     S ++S     H TL    D  +  V++  + G +P
Sbjct: 494 DSGIEASESNRRK--SDIFSFSGRNSFSVSRPSSSHSTLSYANDSASSAVNVAGETGSLP 551

Query: 332 GIK 340
            ++
Sbjct: 552 PLR 554


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.9 bits (59), Expect = 0.81
 Identities = 22/70 (31%), Positives = 34/70 (48%)
 Frame = +2

Query: 38  PTPELQEELRKIAQAIVAPGKGILAADESTGTMGKRLQDIGVENTEENRRKYRQLLFSSD 217
           P PE ++E  K+A++   P K   +A ES     K  +++  + +  N   YR L   + 
Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENL--KESHVNETPYRGLHDVNL 534

Query: 218 PALSENISGV 247
           PA S N S V
Sbjct: 535 PA-SGNASSV 543


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 252 SSTKPCTRRQMMELPLYLSWRNAASSPVSRSTRVLSPCSDLKTSAP 389
           + T       +  L  YLS R +A+ PV R+   L   + ++ SAP
Sbjct: 164 AQTPAAEEENVKTLDEYLSERKSAAKPVGRTVEKLENATKVEKSAP 209


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 38  PTPELQEELRKIAQAIVAPGKGILAADESTGTMGKRLQ 151
           PT E QEE+RK+ + I +   G+     S  T+ +R++
Sbjct: 603 PTEEEQEEMRKLEEKIESTKYGLETIQTSGKTIKQRIE 640


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 388 GALVFRSEQGDNTLVDLDTGDDAAFLQ 308
           G  +  SE   NTLV  D  DD+ FL+
Sbjct: 238 GETIDESEDSKNTLVTEDENDDSVFLE 264


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 117 MSPLVQWASVSRTLESKTLRRIAVNTVNSCSVLTRHSLRT 236
           +SP V + S  R    ++LR+I  +  +S    T HS  T
Sbjct: 524 VSPAVVFTSSPRIFSPQSLRKIGFDPTHSADASTTHSTAT 563


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 95  GKGILAADESTGTMGKRLQDIGVENTEENRRKYRQLLFSSDPA 223
           GKG   ADE       +  +I  +  EEN  K R L+   +PA
Sbjct: 18  GKGTFQADELRRRRETQQIEIRKQKREENLNKRRNLVDVQEPA 60


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +2

Query: 308 LEKRGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 415
           L+K+G++P   V++       +ED+ +T+G++ L +
Sbjct: 703 LKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQLLE 738


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 341 VDKGVVPLFGSEDECTTQGLDDLAQRCAQYKKGR 442
           VD G+ P F  + +  T    +LA+R A+++K R
Sbjct: 76  VDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAR 109


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
 Frame = +3

Query: 294 PLYLS-WRNAASSPVSRSTRVLSPCSDLKT------SAPLKVSMT-WPSVA 422
           P ++S W + A+  +  S +VL+P S LK       +AP+  + + WPS A
Sbjct: 355 PQFVSNWNHCATPTIPVSLQVLTPNSSLKVDPTTPLTAPIHATESFWPSAA 405


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 113 ADESTGTMGKRLQDIGVENTEENRRKYRQLLFSSDPALSENISGVIL 253
           AD+ T   G  +  + + N  EN+   R    SSDPA  +N    +L
Sbjct: 529 ADKMTDMRGLCVNPLLLGNFVENKDLPRMASISSDPATLKNAIAFVL 575


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +2

Query: 134 MGKRLQDIGVENTEENRRKYRQLLFSSDPAL--SENISGVILFHETLYQKTDDGTPLVSL 307
           M  +L+++   + E+ R K R+  +  DP    S  IS V L    + +    G PL  +
Sbjct: 1   MNNQLENVFRFDEEKERAKIRESPWKHDPEFFRSVKISAVALL--KMLRHVSQGMPLEVM 58

Query: 308 LEKRGIIPG---IKVDKGVVPLFGSE 376
              +G + G   I +D   +P+ G+E
Sbjct: 59  GYVQGKVEGASLIILDSFALPVEGTE 84


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 396 VSMTWPSVALSTRKDGWHFAKW 461
           +++ W  VA S + DG+  AKW
Sbjct: 249 MNIIWVPVATSKKPDGFRSAKW 270


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 297  LYLSWR-NAASSPVSRSTRVLSPC-SDLK 377
            LYLSWR NA+    S S  + +PC +D K
Sbjct: 1021 LYLSWRTNASFFYASSSLEIDTPCFNDFK 1049


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 256 PRNPVPEDR*WNSPCISPGETRHHPR-YQGRQ 348
           PR PV  +R W  P +  G  R   R Y+GR+
Sbjct: 78  PRRPVEHERNW-QPELKHGRERFRERDYEGRR 108


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +3

Query: 270 TRRQMMELPLYLSWRNAASSPVSRSTRVLSPCSDLKTSAPLKVSMTWPSVALSTRKDGWH 449
           + ++M +  L LSW++  S+P  R         D++ SA  +++   PS   +TR     
Sbjct: 440 SEQEMEKQDLSLSWQDTMSNPQDRKF-----AQDVRDSAARQLTSETPSWRQATRNANIS 494

Query: 450 FAK 458
           + K
Sbjct: 495 YGK 497


>SPAP11E10.01 |||ornithine cyclodeaminase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 330

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +3

Query: 204 CSVLTRHSLRTFRE*FSSTKPCTRRQMMELPLYLSWRNAASSPVSRSTRVLSPCSDLKTS 383
           CSV    S+R +   F S K    R   ELP         + P+      +  CSD+ +S
Sbjct: 152 CSVRPIRSVRIWNHRFESAKSLASRASKELPSI----QIDAVPIQNLENAVK-CSDIISS 206

Query: 384 APL 392
           A L
Sbjct: 207 ATL 209


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 140 KRLQDIGVENTEENRRKYRQLLFSSDPALSENISGV--ILFHETLY 271
           K L  + ++N  ++  K   ++   DPALS+  S V  +L+ +  Y
Sbjct: 815 KLLDTLNLQNVGDSSVKALSIIIKDDPALSKENSYVEKLLYKQRFY 860


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 161 VENTEENRRKYRQLLFSSDPALSE 232
           +   +E  ++  QLL SS PAL+E
Sbjct: 449 LNEVQEETQRLSQLLISSQPALTE 472


>SPCC16A11.07 |coq10||ubiquinone binding protein
           Coq10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 164

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 346 VDLDTGDDAAFLQERYKGSSIICLLVQGFVEE 251
           VD +       +  ++ GSS+   ++QGFV++
Sbjct: 120 VDFEFASKLHGMMSKFVGSSVASEIIQGFVQQ 151


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +1

Query: 13  HNEHL--LPIPNSRAAGGAQEDRPGDCCPWKGYP 108
           HNE    +PIP +    GA  +  G C   + YP
Sbjct: 289 HNEKKAKIPIPFAIVGAGAPIEHDGKCIRGRAYP 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,675
Number of Sequences: 5004
Number of extensions: 46501
Number of successful extensions: 147
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)