Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O03
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    29   0.76 
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    28   1.0  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    27   1.8  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   2.3  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    26   5.4  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    26   5.4  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   7.1  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   7.1  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    25   7.1  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    25   7.1  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   9.4  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   9.4  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    25   9.4  

>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 350 RVSWRIYPLWEKNRVYIKIL 409
           R SW  YPLW + ++Y K+L
Sbjct: 308 RKSWETYPLWVQVKLYEKVL 327


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 22/61 (36%), Positives = 26/61 (42%)
 Frame = -1

Query: 635 VPTVVNRHHXRRAFQVSKVYCTVCCRYKIAFPSQVKPDVNTIDVYKYRLHQLQTLYDHRL 456
           VPT VN H  R  F     Y    CRY  A     K  V+  +V    L +L  L DH +
Sbjct: 234 VPTHVNNHLVRGIF----AYLKQTCRYSAALNLFEKLRVSIPEV-SVLLAELYLLMDHEV 288

Query: 455 H 453
           H
Sbjct: 289 H 289


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 311 RASFGDGADKTSHRVSWRIYPLWEKNRVYIKILNIHRNQY 430
           +AS  +G   +  R+  R+Y LW+KN   I+ +  H+N++
Sbjct: 91  QASKQNGILPSVCRLLIRLYLLWQKNPAIIEPMEGHQNEF 130


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = -3

Query: 246 NTGSSFKNILNSFGK*SLTMFVPNMFHSL*AYSTMFLLPSESSLFTTRFITSPXPSFSN 70
           +TG+   N L+S      T ++PN   S+ A ST  L  +  S  T+   TS  PS S+
Sbjct: 528 STGALSSNSLSSSTSSVSTSYIPNASSSVYASSTEALSSNSLSSSTSSASTSYIPSASS 586


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 161 KLWNMF--GTNIVKDHFPKEFRMFLNEDPVLIINKRDELALKLQ 286
           KL N +   T  +KD+        L+EDP++ + + +E A +LQ
Sbjct: 726 KLGNQYYNDTQWLKDNLDSHLSHTLSEDPLIKVEELEEKAKRLQ 769


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 158 YKLWNMFGTNIVKDHFPKEFRMFLNE--DPVLIINKRDELALKLQLSMDNDG 307
           Y+ W + G       + K+  ++L E  D + I+NKR   ALK  L  +  G
Sbjct: 207 YEYWTLKGLR----EYVKQPEVYLKEVLDSIAILNKRGPYALKYSLKPEYKG 254


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 551 IAFPSQVKPDVNTIDVYKYRLHQLQTLYDHRL 456
           I FPS  K  VNT++VYK  L +    Y+ RL
Sbjct: 22  ILFPSIPKALVNTLNVYK--LEERLNYYNDRL 51


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 485 DADDTYRHQWYLHPVLLEKETLFYIYNRQYNKPLKL 592
           D+ D Y+  WY  P LL          + Y KPL+L
Sbjct: 374 DSSDLYK--WYKGPTLLSALDQLVPPEKPYRKPLRL 407


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 110 VNRLLSEGKRNIVEYAYKLWNMFGTNIVKDHFPKEF 217
           V+RLL   KRN+  +   + + +  NI++++  KEF
Sbjct: 117 VDRLLDLCKRNLSTFTIDISSSWRQNIIENNEQKEF 152


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 232 VQKHSKLFWEVIFDY 188
           V KH KLFW V  DY
Sbjct: 4   VGKHVKLFWNVYSDY 18


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 239 PVLIINKRDELALKLQLSMD 298
           PV+++NK D   L+LQ+S +
Sbjct: 153 PVVVVNKVDRALLELQISQE 172


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 239 PVLIINKRDELALKLQLSMD 298
           PV+++NK D   L+LQ+S +
Sbjct: 153 PVVVVNKVDRALLELQISQE 172


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 146 VEYAYKLWNMFGTNIVKDHFPKEFR 220
           V+ A   W    TN+ +D F KE+R
Sbjct: 324 VDEALVFWRKSFTNVTEDKFNKEYR 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,998
Number of Sequences: 5004
Number of extensions: 50936
Number of successful extensions: 149
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)