Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O03
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328...    31   0.79 
07_03_0908 + 22507565-22507810,22507925-22508872,22509314-225103...    30   1.4  
10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290...    29   4.2  
08_02_1282 - 25852113-25852406,25852495-25852668,25852849-258529...    28   5.6  
03_05_0006 + 19527479-19528769,19529693-19530105,19530220-195304...    27   9.7  

>05_03_0604 -
           16132173-16132391,16132488-16132556,16132824-16132898,
           16132981-16133113,16133188-16133297,16133360-16133407,
           16133657-16133983,16135006-16135233,16135360-16135689,
           16135780-16136586
          Length = 781

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 380 EKNRVYIKILNIHRNQYLKLEIKSDVDGDHKAFGADADDTYRHQW 514
           + +R YI IL  HRN+ LK+E+      D    G     +++  W
Sbjct: 61  DNSRHYIVILGSHRNKRLKIEVDGKTVVDVAGIGLCCSSSFQSYW 105


>07_03_0908 +
           22507565-22507810,22507925-22508872,22509314-22510337,
           22510425-22510477
          Length = 756

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -3

Query: 219 LNSFGK*SLTMFVPNMFHSL*AYSTMFLLPSE 124
           LN+ GK  LT FVPN  H L   STM +L ++
Sbjct: 183 LNTNGKYRLTEFVPNHNHQLATASTMHMLKAK 214


>10_07_0045 +
           12328388-12328419,12328504-12328645,12328862-12329054,
           12329224-12329320,12329404-12329528,12329616-12329734,
           12331225-12331298,12331359-12331413,12331450-12331500,
           12331611-12331857,12331940-12332036,12332170-12332244,
           12334286-12334488,12334757-12334905,12334995-12335168,
           12335276-12335401,12335493-12335623,12335743-12335818,
           12335898-12336027,12336115-12336193,12336267-12336465,
           12336591-12336698,12336769-12337025,12337267-12337282
          Length = 984

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 313 PVSVIVHTQLKLKSQFISLVNN 248
           P  +IVH + K++SQF  ++NN
Sbjct: 93  PTEMIVHLRFKIRSQFCMILNN 114


>08_02_1282 -
           25852113-25852406,25852495-25852668,25852849-25852940,
           25853465-25853587,25853691-25853721,25854295-25854434,
           25854871-25854932,25855027-25855103,25855766-25855868,
           25856146-25856207,25857213-25857374
          Length = 439

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 632 PTVVNRHHXRRAFQVSKVYCTVC 564
           P+V+NRH   R F +S+++   C
Sbjct: 176 PSVINRHEQLRPFSISQMFTNFC 198


>03_05_0006 +
           19527479-19528769,19529693-19530105,19530220-19530430,
           19530531-19530768,19530847-19530997,19531240-19531542
          Length = 868

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 299 NDGDRASFGDGADKTSHRVSWRIYPLWEKNRV 394
           N+G    FG      S   +W I P W++N V
Sbjct: 481 NNGQVTPFGQRNHTASALNNWEITPFWQRNHV 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,128,471
Number of Sequences: 37544
Number of extensions: 311152
Number of successful extensions: 717
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)