Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O03
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)                   35   0.050
SB_31468| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_45475| Best HMM Match : RhoGAP (HMM E-Value=1.26117e-44)            27   9.9  

>SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)
          Length = 671

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 24/99 (24%), Positives = 39/99 (39%)
 Frame = +2

Query: 218 RMFLNEDPVLIINKRDELALKLQLSMDNDGDRASFGDGADKTSHRVSWRIYPLWEKNRVY 397
           R+F   D     ++ D++AL L +   N   R+   D         S   +P W  N  +
Sbjct: 178 RLFWEGDQKARESESDDMALDLFVRQGNTTWRSGKSDNCQNNRPTSSRSYFPKWRSNNEF 237

Query: 398 IKILNIHRNQYLKLEIKSDVDGDHKAFGADADDTYRHQW 514
              LN + N+Y K  + +    D   + +D   T  H W
Sbjct: 238 QDFLNSNANRYDKFLVVNRFHSDMCRYHSDL--TRHHFW 274


>SB_31468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 338 KTSHRVSWRIYPLWEKNRVYIKILNIHRNQYLKLEI 445
           K SH   +R   +WE ++ Y+K +NI   ++ KLE+
Sbjct: 57  KLSHSTMFRKLFVWETSKTYLKDINI---RHFKLEV 89


>SB_45475| Best HMM Match : RhoGAP (HMM E-Value=1.26117e-44)
          Length = 552

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = +2

Query: 5   YEQLYDSVVVGDYKAAVMKTLRLENDGXGEVINLVVNRLLSEGKRNIVEYAYKLWNMFGT 184
           + QL + ++   Y  + +KT+R+E+D       L +  LL       ++Y  K    F +
Sbjct: 252 FRQLQEPLLTNTYHDSFIKTMRIEDDNTRTKAMLYICLLLPLAHLQALKYTMKFLAEFAS 311

Query: 185 NIVK 196
           +  K
Sbjct: 312 HSEK 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,954,211
Number of Sequences: 59808
Number of extensions: 376577
Number of successful extensions: 1255
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)