Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O03
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z83113-2|CAB05544.1|  479|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    29   3.8  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/71 (30%), Positives = 31/71 (43%)
 Frame = +2

Query: 326 DGADKTSHRVSWRIYPLWEKNRVYIKILNIHRNQYLKLEIKSDVDGDHKAFGADADDTYR 505
           D   K   +   ++YPL E   VYI+ + I +   + L    D+ GD    GAD +   R
Sbjct: 189 DSIGKDIEKTCSKLYPLQE---VYIRKVKIIKRPKVDLGRLHDLHGDSITVGADGEKVDR 245

Query: 506 HQWYLHPVLLE 538
              Y  PV  E
Sbjct: 246 PDDYEPPVQQE 256


>AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical
           protein K12B6.8 protein.
          Length = 714

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 452 DVDGDHKAFGADADDTYRHQWYLHPVLLEKETLFYIYN 565
           D  G+H+ FG DA   Y +Q+YL+   +E +  F + N
Sbjct: 82  DFPGNHQYFGIDASVPYNNQFYLNRD-MESDKFFLLKN 118


>Z83113-2|CAB05544.1|  479|Caenorhabditis elegans Hypothetical
           protein K08H10.4 protein.
          Length = 479

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 47  AAVMKTLRLENDGXGEVINLVVNRLLSEGKRNIV-EYAYKLWNMFGTN 187
           AA +  L+LE D   E  + ++   + EG +    EYA K WN+ G++
Sbjct: 256 AARLNILQLETDNEIESTHQLITSCMPEGYQLTEWEYALKFWNINGSS 303


>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = +2

Query: 275 LKLQLSMDNDGDRASFGDGADKTSHRVSWRIYPLWEKNRVYIKILNIHRNQ-----YLKL 439
           LK Q+   +D  R     G DK  +       P+ + +    K+LNI  N+     Y+KL
Sbjct: 2   LKRQIEFTSDSIRFRCPGGGDKEYYYTQMMYKPIADNSHTGAKLLNIELNKQCEESYIKL 61

Query: 440 EIKS 451
           E  S
Sbjct: 62  EFTS 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,052,617
Number of Sequences: 27780
Number of extensions: 280916
Number of successful extensions: 704
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)