Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_O01
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   108   5e-25
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    29   0.60 
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   9.7  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    25   9.7  
SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce...    25   9.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.7  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  108 bits (260), Expect = 5e-25
 Identities = 63/171 (36%), Positives = 85/171 (49%), Gaps = 1/171 (0%)
 Frame = +2

Query: 38  MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVP-AASLPHVLRWYSHI 214
           M   D+ +  GL +LN +L ++S++ GY PSQAD  VF+ VG  P  A  P+  RWY  I
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60

Query: 215 ASYTPAERKTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGXXXXXXXXXXXXXXX 394
           A+Y  A     ++ VS               +        LFGS                
Sbjct: 61  ATYDLATLPGTAKEVSAYGPEGAAAAEEDEID--------LFGSDEEEDPEAERIKAERV 112

Query: 395 LKAYADXKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWG 547
            + Y   K+ KP  + KS + LDVKPWDDET M E+E  VR+I+MDGL+WG
Sbjct: 113 AE-YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWG 162


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -2

Query: 530 PFQLCALGFPFLSYLSHHPMVL--HQGL*RTLQ 438
           P+QL  L + +L + +HHP +L    GL +T+Q
Sbjct: 558 PYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQ 590


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 206 CTTSKHEVGWQQVLCRLAQIL*YQLEKECIQTHNFFQLN 90
           C+T K E   +   CRL  I   + +  CI  +N   LN
Sbjct: 160 CSTCKFEKPARSKHCRLCNICVEKFDHHCIWINNCVGLN 198


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 207 ATSHRTPLLNAKPGQRELAH*QLELNPRPLLHPP 308
           AT+  TP   A P   E  + +   +P P+  PP
Sbjct: 118 ATASNTPQNEASPAATEAVNHERPASPPPVYRPP 151


>SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 214

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 542 IEAHPFQLCALGFPFLSYLSHHPMVLHQ 459
           I++HP  L  L  P   YL  H  ++H+
Sbjct: 104 IQSHPNLLLYLSSPERQYLLRHQQIVHR 131


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/50 (22%), Positives = 24/50 (48%)
 Frame = +2

Query: 398 KAYADXKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWG 547
           KA  +  ++    +    + + ++ W++E    + E QVR + +  L WG
Sbjct: 298 KAETEGTNEPETSVQIDPLNVSMENWENEMKNLDCETQVRQLALYLLCWG 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,563
Number of Sequences: 5004
Number of extensions: 32528
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)