Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N23
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916...    31   0.87 
05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281     28   4.6  
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332...    28   6.1  
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316...    27   8.1  
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366...    27   8.1  

>01_03_0256 +
           14288885-14288936,14289362-14291335,14291648-14291673,
           14291855-14292025,14292560-14292647,14292711-14292802,
           14292920-14293384,14293860-14294633,14294890-14295087,
           14296940-14297374,14297455-14297688,14298042-14298323
          Length = 1596

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 3/130 (2%)
 Frame = +1

Query: 28  CKGKCWNSWRNTHTADIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTR 207
           C+   W   ++     I F+SY +     +P WW +E   N      EIY        + 
Sbjct: 267 CEQLVWAPRKDGQGQSIPFSSYIWR-RGTIPIWWGAE-IKNAVSVEAEIYVADDPFNGSL 324

Query: 208 YYFERLTNGLGSIP-EFSWYSPIKTGYYPLMTSYYFPFAQ-RPDNYNLHSVK-NYEAIRF 378
            Y++RL    G+   E +  S  K G  P++      +   +P+   + S K + E +R 
Sbjct: 325 QYYQRLGRRYGNKSLEVNATSQKKPGVVPIVCVNLLRYGDGKPETVLVDSFKSSLEYLRS 384

Query: 379 LDIFEKTFVQ 408
                KT++Q
Sbjct: 385 TKKLGKTWIQ 394


>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
          Length = 518

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 431 NRMARKLISTMKRQLTLSETIGKRTPICMKKNVTRIINDLMKLS 562
           NR+ R L++  +++    E I +    CMKK    ++N L  +S
Sbjct: 39  NRLLRSLVNIHEQETYSREIITEAIESCMKKQADNLVNTLDVIS 82


>06_01_0469 +
           3322886-3323564,3324033-3324953,3325025-3325155,
           3325237-3325317,3328173-3328820
          Length = 819

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 376 TVLLRSSLRCVDCSCPAFERMG 311
           TVLL +S   + C C  FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409


>10_08_0355 -
           17131178-17131268,17131376-17131429,17131521-17131663,
           17131812-17132096,17132168-17132301,17132383-17132556,
           17132639-17132707,17132814-17132878,17133441-17133589,
           17133747-17133989,17134119-17134255,17134340-17134561,
           17134661-17134827,17136680-17136819
          Length = 690

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +1

Query: 334 NYNLHSV---KNYEAIRFLDIFEKTFVQSLQK 420
           NYN+  V   KN+ A+R  DIF KT  +  +K
Sbjct: 521 NYNIAIVSLKKNFNAVRLEDIFSKTVQEPSEK 552


>03_05_0325 + 23135816-23135894,23136161-23136333,23136440-23136613,
            23136881-23137004,23137090-23137190,23137337-23137423,
            23137801-23137896,23138209-23138329,23138475-23138603,
            23139458-23139549,23139660-23139771,23140189-23140541,
            23140670-23140899,23141179-23141278,23143357-23143411,
            23143548-23145496,23145587-23145745,23146514-23146685,
            23146758-23147056,23147246-23147521
          Length = 1626

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 467  RQLTLSETIGKRTPICMKKNVTRIINDLMKLSLAMC 574
            RQL   ET+G  T IC  K  T   N +  +   +C
Sbjct: 1037 RQLAACETMGSATVICSDKTGTLTTNRMTVVKACIC 1072


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,911,322
Number of Sequences: 37544
Number of extensions: 294473
Number of successful extensions: 795
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)