Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_N23
(575 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14) 29 2.7
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12) 29 3.6
SB_57981| Best HMM Match : Hemocyanin_M (HMM E-Value=8.5) 28 4.8
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41) 28 4.8
SB_53979| Best HMM Match : TetR_C (HMM E-Value=5.3) 28 6.3
SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33) 28 6.3
SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 28 6.3
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 28 6.3
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 28 6.3
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 28 6.3
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_9562| Best HMM Match : TetR_C (HMM E-Value=4) 28 6.3
SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_47512| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 27 8.3
SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051) 27 8.3
SB_29623| Best HMM Match : GM_CSF (HMM E-Value=5) 27 8.3
SB_11737| Best HMM Match : Glyco_hydro_65m (HMM E-Value=0) 27 8.3
SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27) 27 8.3
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +1
Query: 277 TGYYPLMT-SYYFPF--AQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKK 447
T Y P T S Y Q+P+N++LH +A+ T L GKF+S G+
Sbjct: 4715 TSYQPAATDSLYISSQSTQKPNNHHLHRTCKADALEV----NVTLRGGLHAGKFKSVGRT 4770
Query: 448 IDFHD 462
D H+
Sbjct: 4771 RDVHE 4775
>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -2
Query: 469 PFHRGNQFSCHTIRICLSVGTVRKSFQKCPRTVLL-RSSLRCVDC 338
P H NQ C IC+ G KS KCP L S RC C
Sbjct: 245 PCHEANQGGCEGRAICVYTGP-GKSICKCPPGYKLDESQARCTLC 288
>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
Length = 869
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 152 LSIAVAKYITISTNN*QHVITS-SVLQTAWVPYLNSLGTRLLR 277
+ +A AKYI +S + + VI + S + +PY NS+ T +LR
Sbjct: 165 IQLAEAKYINVSLHFLEQVIVALSEKSRSHIPYRNSMMTSVLR 207
>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
Length = 1650
Score = 28.7 bits (61), Expect = 3.6
Identities = 26/97 (26%), Positives = 39/97 (40%)
Frame = +1
Query: 283 YYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHD 462
Y PL T+ ++ + RP NYN N E LD L K + K +
Sbjct: 1560 YSPLSTAPFYDYGYRPQNYNF---MNPETRASLD---APNAPKLPKKIRHALSKAL--RS 1611
Query: 463 EKAINFVGNYWQENAHLYEEERYKDYQRSYEIVARHV 573
+ + V ++ +E HL ER K + I +HV
Sbjct: 1612 DPVMKVVESFAKEETHLM-NERLKGVTKHSRIAEKHV 1647
>SB_57981| Best HMM Match : Hemocyanin_M (HMM E-Value=8.5)
Length = 292
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/80 (26%), Positives = 31/80 (38%)
Frame = +1
Query: 298 TSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAIN 477
TS Y PF R S+K + I+ SL K K + +H + A
Sbjct: 88 TSRYRPFVDR-------SIKKFGLIKLGKRIGDILDTSLLKAKQVLIPEGASYHHDNATE 140
Query: 478 FVGNYWQENAHLYEEERYKD 537
++ N W+ N E Y+D
Sbjct: 141 WITNDWESNISHLESILYRD 160
>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/55 (23%), Positives = 23/55 (41%)
Frame = +1
Query: 52 WRNTHTADIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYF 216
+R H + YYYY++ + +++ Y H YY +Y YY+
Sbjct: 97 YRQRHAYYYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYY 151
>SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 28.3 bits (60), Expect = 4.8
Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 2/144 (1%)
Frame = +1
Query: 130 SSERYGNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYY 309
S ER ++RG Y Y++ R Y G E + K GY Y
Sbjct: 124 SYERSYERSYKRG--YERSYERSYERGYKRSYERGNKRSYERGYKRGYKRGYERGYERSY 181
Query: 310 FPFAQRP--DNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 483
+R +Y V++YE + +++++ +S ++ SY + + E++ +
Sbjct: 182 KRSYERSYERSYKRSYVRSYER-SYKRSYKRSYKRSYKRSYKRSYKRSYERSYERS--YK 238
Query: 484 GNYWQENAHLYEEERYKDYQRSYE 555
+Y + YE + Y+RSYE
Sbjct: 239 RSYKRSYERSYERSYERSYERSYE 262
>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
Length = 1069
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 427 FESYGKKIDFHDEKAINFVGNYWQENAHLYEEERYKDYQRSYEIVAR 567
FE Y ++ DEKA ++ Y ++ A + E+ +RSY + +
Sbjct: 138 FEIYVSLNEWQDEKAGQYLAVYLKDEAKAFYHEQEDSVRRSYRALCK 184
>SB_53979| Best HMM Match : TetR_C (HMM E-Value=5.3)
Length = 327
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -1
Query: 527 RSSSYRWAFSCQ*FPTKLIAFSSWKSIFLPYDSNLPFCRDC 405
+ + + W+ CQ T + + + ++ +PY+ +LP DC
Sbjct: 122 KDTKWYWSAECQKAFTSVKSMITVDNVLVPYNPDLPIILDC 162
>SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33)
Length = 566
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -1
Query: 527 RSSSYRWAFSCQ*FPTKLIAFSSWKSIFLPYDSNLPFCRDC 405
+ + + W+ CQ T + + + ++ +PY+ +LP DC
Sbjct: 26 KDTKWYWSAECQKAFTNVKSMITVDNVLVPYNPDLPIILDC 66
>SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1084
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -1
Query: 527 RSSSYRWAFSCQ*FPTKLIAFSSWKSIFLPYDSNLPFCRDC 405
+ + + W+ CQ T + + + ++ +PY+ +LP DC
Sbjct: 680 KDTKWYWSAKCQKAFTSVKSMITVDNVLVPYNPDLPIILDC 720
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Frame = +1
Query: 412 LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENAHL--YEEERYKDYQ 543
L+KGKF+ S K ID E+ F+G+ W ++ L +++E+ K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143
>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1122
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -1
Query: 527 RSSSYRWAFSCQ*FPTKLIAFSSWKSIFLPYDSNLPFCRDC 405
+ + + W+ CQ T + + + ++ +PY+ +LP DC
Sbjct: 714 KDTKWYWSAECQKAFTNVKSMITVDNVLVPYNPDLPIILDC 754
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 409 SLQKGKFESYGKKIDFHDEKAINFVGNYWQENAHLYEEERYKDYQR 546
+LQ+G S K+++ A+ G+ Q++ ++ E E +DYQR
Sbjct: 499 NLQRGYIASNQDKLEWKVFFAMGKTGDNSQDSRNIREAEEQRDYQR 544
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -1
Query: 527 RSSSYRWAFSCQ*FPTKLIAFSSWKSIFLPYDSNLPFCRDC 405
+ + + W+ CQ T + + + ++ +PY+ +LP DC
Sbjct: 757 KDTKWYWSAECQKAFTNVKSMITVDNVLVPYNPDLPIILDC 797
>SB_9562| Best HMM Match : TetR_C (HMM E-Value=4)
Length = 242
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -1
Query: 527 RSSSYRWAFSCQ*FPTKLIAFSSWKSIFLPYDSNLPFCRDC 405
+ + + W+ CQ T + + + ++ +PY+ +LP DC
Sbjct: 152 KDTKWYWSAECQKAFTNVKSMITVDNVLVPYNPDLPIILDC 192
>SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -1
Query: 527 RSSSYRWAFSCQ*FPTKLIAFSSWKSIFLPYDSNLPFCRDC 405
+ + + W+ CQ T + + + ++ +PY+ +LP DC
Sbjct: 134 KDTKWCWSAKCQKAFTNVKSMITVDNVLVPYNPDLPIILDC 174
>SB_47512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -1
Query: 527 RSSSYRWAFSCQ*FPTKLIAFSSWKSIFLPYDSNLPFCRDC 405
+ + + W+ CQ T + + + ++ +PY+ +LP DC
Sbjct: 11 KDTKWCWSAKCQKAFTNVKSMITVDNVLVPYNPHLPIILDC 51
>SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 797
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -1
Query: 527 RSSSYRWAFSCQ*FPTKLIAFSSWKSIFLPYDSNLPFCRDC 405
+ + + W+ CQ T + + + ++ +PY+ +LP DC
Sbjct: 569 KDTKWCWSAKCQKAFTNVKSMITVDNVLVPYNPDLPIILDC 609
>SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
Length = 522
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -1
Query: 527 RSSSYRWAFSCQ*FPTKLIAFSSWKSIFLPYDSNLPFCRDC 405
+ + + W+ CQ T + + + ++ +PY+ +LP DC
Sbjct: 398 KDTKWCWSAKCQKAFTNVKSMITVDNVLVPYNPDLPIILDC 438
>SB_29623| Best HMM Match : GM_CSF (HMM E-Value=5)
Length = 296
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -1
Query: 527 RSSSYRWAFSCQ*FPTKLIAFSSWKSIFLPYDSNLPFCRDC 405
+ + + W+ CQ T + + + ++ +PY+ +LP DC
Sbjct: 101 KDTKWCWSAKCQKAFTNVKSMITVDNVLVPYNPHLPIILDC 141
>SB_11737| Best HMM Match : Glyco_hydro_65m (HMM E-Value=0)
Length = 702
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 28 CKGKCWNSWRNTHTADIGFNSYYYYFHSHLPFW 126
C G+ + + T DIGF + YY +H W
Sbjct: 364 CPGQVYADFEQHITGDIGFAAKQYYIATHDQAW 396
>SB_8223| Best HMM Match : RVT_1 (HMM E-Value=4e-27)
Length = 1307
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -1
Query: 527 RSSSYRWAFSCQ*FPTKLIAFSSWKSIFLPYDSNLPFCRDC 405
+ + + W+ CQ T + + + ++ +PY+ +LP DC
Sbjct: 562 KDTKWCWSAKCQKAFTNVKSMITVDNVLVPYNPDLPIILDC 602
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,958,539
Number of Sequences: 59808
Number of extensions: 370476
Number of successful extensions: 1050
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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