Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_N23
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81579-9|CAN99688.1|  225|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear recep...    29   2.4  
AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear horm...    29   2.4  
Z81581-8|CAB04661.2|  244|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>Z81579-9|CAN99688.1|  225|Caenorhabditis elegans Hypothetical
           protein R13H4.2a protein.
          Length = 225

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 73  DIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRY 210
           D  ++ YYY+   +   ++ S RY    +     Y+N Y    TRY
Sbjct: 74  DYWYDKYYYFSPLYRSTYYPSRRYSYSDYLPNPYYWNNYGSYWTRY 119


>AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear receptor
           NHR-92 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 460 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 374
           RG+++ C  +  CL V T+R   +KC  T
Sbjct: 43  RGHEYRCKQMENCLIVSTIRNMCKKCRYT 71


>AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 92 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 460 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 374
           RG+++ C  +  CL V T+R   +KC  T
Sbjct: 35  RGHEYRCKQMENCLIVSTIRNMCKKCRYT 63


>Z81581-8|CAB04661.2|  244|Caenorhabditis elegans Hypothetical
           protein T02E1.6 protein.
          Length = 244

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/57 (22%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = -3

Query: 546 SLIILVTF-FFIQMGVLLPIVSDKVNCLFIVEINFLAIRFEFAFL*GLYESLFKNVQ 379
           +++IL+T+ FF++   ++PI+   VN + ++ +  +    +F  L  + E+L ++++
Sbjct: 123 AMMILITWSFFVENNEMIPIILCFVNVIILIIVVLILFAIQFGRLNVVEEALNEDIR 179


>AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical
           protein K03H6.2 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +1

Query: 49  SWRNTHTADIGFNSYYYYFHS---HLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYY 213
           ++ N H     ++    + H    HLPF +    +  + H R EI+YN    + + Y+
Sbjct: 240 AYSNWHQNTFAYSFRIVHAHDMVPHLPFQYELVDHDKMYHHRTEIWYNNDMSIGSSYH 297


>Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical
           protein W04E12.9 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/62 (20%), Positives = 28/62 (45%)
 Frame = +1

Query: 283 YYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHD 462
           Y P + S +  F   P ++NL+   +     F+     T + + +K K E++  ++  H 
Sbjct: 3   YLPSLPSLFLYFYDHPSSHNLYIYLHL----FVQSNTTTIISNFRKQKHENHSSEVSMHQ 58

Query: 463 EK 468
            +
Sbjct: 59  HR 60


>Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical
           protein W04E12.9 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/62 (20%), Positives = 28/62 (45%)
 Frame = +1

Query: 283 YYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHD 462
           Y P + S +  F   P ++NL+   +     F+     T + + +K K E++  ++  H 
Sbjct: 3   YLPSLPSLFLYFYDHPSSHNLYIYLHL----FVQSNTTTIISNFRKQKHENHSSEVSMHQ 58

Query: 463 EK 468
            +
Sbjct: 59  HR 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,341,427
Number of Sequences: 27780
Number of extensions: 282875
Number of successful extensions: 743
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)